Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2113 ATGGGTTACATATGCGATTTCTGTGGGCATCAAAGGTCGGTTGTTTACTGCCGATCCGATGCCGCAGCTTTGTGCTTGTCTTGTGACCGTAATGTTCACTCTGCTAATGCGCTGTCAAGGCGCCATGAGAGGACATTGTTATGTGATAGATGTCATTCAACAGCTGCATTTGTTAGATGCCCAGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATTTAGGACATAGCTCATCTGCATCCATTTCGTCTCGAAAGAGGCAGCCAATCAACTGTTACACTGACTGCCCAACGGCTGCCGAGCTCTCATCTATCTGGTCATTTGTCCTAGATCTCCCTTCTTCAGGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTTCTGAAAATAGTGCAGTAAATACCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATAAAACCAATGAATTCTCAGATGTGGATAAATCAATTTGCCATGGCTCCTCTTCATTGCCTCAATATTTAGCCAAGCCTTACATGGTGGACCAACCAATTACTATAGATGCAACTTCACCTCAGGATATTGAAGATGACCTCTATGAAAATTTGAATATGGAGGAAGATAGTTTAAATCTTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGTTTGTTCTGGATCAAAAGCTTATCGGCTGGAAAATTTAGTTGCCCTGGTGCAGCTGCTGCAGAGGGCACATCTGTCGATTTAGCTAATAATAGGATGCGCCCAGCGTGCAGTAATGCAGCATCAGCCGAGTCCGCGATGAGTGCAAAGACTGAACCGAATCTTTGTTATACCAATAAACAAAAGCTTTCTGGCCTGACTGGAGAGAGCAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGTTTCTAATGGGAGAGCCTCCATGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAACCGTAGCGATGCCGTAATGCGTTATAAGGAAAAGAAGAAAGCTCGAAAGTTCGAAAAGAAGGTGCGGTACGCCTCTCGAAAAGTGAGGGCCGATACGAGAAGGCGTGTGAAGGGGCGCTTTATTAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATGAAACCAGAAGCTACTGA 1194 43.38 MGYICDFCGHQRSVVYCRSDAAALCLSCDRNVHSANALSRRHERTLLCDRCHSTAAFVRCPEENISLCQNCDYLGHSSSASISSRKRQPINCYTDCPTAAELSSIWSFVLDLPSSGDACEQELGLMSISENSAVNTWGPDDKAGQNVSGVDKTNEFSDVDKSICHGSSSLPQYLAKPYMVDQPITIDATSPQDIEDDLYENLNMEEDSLNLENYEELFGVSLSYSEELLENGGIDSLFWIKSLSAGKFSCPGAAAAEGTSVDLANNRMRPACSNAASAESAMSAKTEPNLCYTNKQKLSGLTGESSAGEHQDCGASSMFLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFIKAGEAYDYDPLNETRSY 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34234146 34240451 - Sed0007319.1 Sed05g2113 714739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2113 397 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Sed05g2113 397 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515(InterPro)
Sed05g2113 397 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Sed05g2113 397 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Sed05g2113 397 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 387 - -
Sed05g2113 397 CDD Bbox1_BBX-like 4 47 IPR049808 -
Sed05g2113 397 Pfam CCT motif 340 382 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3749 Sed-Chr4:46204145 Sed05g2113 Sed-Chr5:34234146 1.70E-162 dispersed
Sed04g3750 Sed-Chr4:46204145 Sed05g2113 Sed-Chr5:34234146 1.70E-162 dispersed
Sed05g2113 Sed-Chr5:34234146 Sed05g3044 Sed-Chr5:40848055 1.40E-102 dispersed
Sed05g2113 Sed-Chr5:34234146 Sed05g2114 Sed-Chr5:34234146 6.40E-204 tandem
Sed04g3748 Sed-Chr4:46204145 Sed05g2113 Sed-Chr5:34234146 1.70E-162 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38587 PF06203 CCT 3.30E-16 CL0281 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2113 - - - 0.0