Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2113 | ATGGGTTACATATGCGATTTCTGTGGGCATCAAAGGTCGGTTGTTTACTGCCGATCCGATGCCGCAGCTTTGTGCTTGTCTTGTGACCGTAATGTTCACTCTGCTAATGCGCTGTCAAGGCGCCATGAGAGGACATTGTTATGTGATAGATGTCATTCAACAGCTGCATTTGTTAGATGCCCAGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATTTAGGACATAGCTCATCTGCATCCATTTCGTCTCGAAAGAGGCAGCCAATCAACTGTTACACTGACTGCCCAACGGCTGCCGAGCTCTCATCTATCTGGTCATTTGTCCTAGATCTCCCTTCTTCAGGTGATGCTTGTGAGCAAGAATTAGGATTGATGAGCATTTCTGAAAATAGTGCAGTAAATACCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATAAAACCAATGAATTCTCAGATGTGGATAAATCAATTTGCCATGGCTCCTCTTCATTGCCTCAATATTTAGCCAAGCCTTACATGGTGGACCAACCAATTACTATAGATGCAACTTCACCTCAGGATATTGAAGATGACCTCTATGAAAATTTGAATATGGAGGAAGATAGTTTAAATCTTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGTTTGTTCTGGATCAAAAGCTTATCGGCTGGAAAATTTAGTTGCCCTGGTGCAGCTGCTGCAGAGGGCACATCTGTCGATTTAGCTAATAATAGGATGCGCCCAGCGTGCAGTAATGCAGCATCAGCCGAGTCCGCGATGAGTGCAAAGACTGAACCGAATCTTTGTTATACCAATAAACAAAAGCTTTCTGGCCTGACTGGAGAGAGCAGTGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGTTTCTAATGGGAGAGCCTCCATGGTGTTCTATGGCCACTGAGAGTTCCTTCCAGTCATCTAACCGTAGCGATGCCGTAATGCGTTATAAGGAAAAGAAGAAAGCTCGAAAGTTCGAAAAGAAGGTGCGGTACGCCTCTCGAAAAGTGAGGGCCGATACGAGAAGGCGTGTGAAGGGGCGCTTTATTAAAGCTGGAGAAGCTTATGACTATGATCCATTGAATGAAACCAGAAGCTACTGA | 1194 | 43.38 | MGYICDFCGHQRSVVYCRSDAAALCLSCDRNVHSANALSRRHERTLLCDRCHSTAAFVRCPEENISLCQNCDYLGHSSSASISSRKRQPINCYTDCPTAAELSSIWSFVLDLPSSGDACEQELGLMSISENSAVNTWGPDDKAGQNVSGVDKTNEFSDVDKSICHGSSSLPQYLAKPYMVDQPITIDATSPQDIEDDLYENLNMEEDSLNLENYEELFGVSLSYSEELLENGGIDSLFWIKSLSAGKFSCPGAAAAEGTSVDLANNRMRPACSNAASAESAMSAKTEPNLCYTNKQKLSGLTGESSAGEHQDCGASSMFLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFIKAGEAYDYDPLNETRSY | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34234146 | 34240451 | - | Sed0007319.1 | Sed05g2113 | 714739 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2113 | 397 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
Sed05g2113 | 397 | ProSiteProfiles | CCT domain profile. | 340 | 382 | IPR010402 | GO:0005515(InterPro) | |
Sed05g2113 | 397 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
Sed05g2113 | 397 | ProSiteProfiles | Zinc finger B-box type profile. | 43 | 90 | IPR000315 | GO:0008270(InterPro) | |
Sed05g2113 | 397 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 2 | 387 | - | - | |
Sed05g2113 | 397 | CDD | Bbox1_BBX-like | 4 | 47 | IPR049808 | - | |
Sed05g2113 | 397 | Pfam | CCT motif | 340 | 382 | IPR010402 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3749 | Sed-Chr4:46204145 | Sed05g2113 | Sed-Chr5:34234146 | 1.70E-162 | dispersed | |
Sed04g3750 | Sed-Chr4:46204145 | Sed05g2113 | Sed-Chr5:34234146 | 1.70E-162 | dispersed | |
Sed05g2113 | Sed-Chr5:34234146 | Sed05g3044 | Sed-Chr5:40848055 | 1.40E-102 | dispersed | |
Sed05g2113 | Sed-Chr5:34234146 | Sed05g2114 | Sed-Chr5:34234146 | 6.40E-204 | tandem | |
Sed04g3748 | Sed-Chr4:46204145 | Sed05g2113 | Sed-Chr5:34234146 | 1.70E-162 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38587 | PF06203 | CCT | 3.30E-16 | CL0281 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2113 | - | - | - | 0.0 |