Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2127 ATGTCTTCGACTTCGACAAATAAGACCGCATGTTCTAAGACGAGCTGCGACCGAATGAAACATGGAGCTCATGTGGTTATACAGACCCCAATTGATGCTAAGCTTCATGTGGACTTTGAGGGTTCAGAGAGGTTCTTTGATTACTCTGCCTCAGTTGATTTGAATGCCTCGAGTTCCAGGAAACATGTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTTTAGTTCAACCATTTGGTTGTATGATTGCTGTCGATGGGGAAAACTTGTCAGTCCTTGCATACAGTGAAAATGCTCCCGAAATGTTGGACTTGGCCCCTCATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGATCAGATGTACGAACACTTTTTCGCTCACCGGGAGCTGCTGCATTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAAAACTTCAGGTAAACCATTCTATGCAATTTTGCATCGAGTAGATGTGGGATTAATTATAGATTTGGAACCAGTGAATCCAGTTGATGTGCCAGTGACGGCAGCTGGAGCATTGAAATCTTATAAGCTAGCAGCGAAAGCCATCTCGAAATTGCAGTCCTTGCCGAGTGGGAGTATCTCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGTGATTTGACTGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTAGTAGCTGAGTGCTGCCGACCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTCAGGATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGTCTCAGCCATTAAGTCTATGTGGGTCTGCACTGAGGGCTCCTCATGGTTGTCATGCCCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCCATTACAATCAACGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGCTTATTAGTTTGTCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTAACTCAATCTCCCAATATTATGGATCTCGTTAGGTGTGATGGTGCTGCGTTATATTACAAAAAGAAATTTTGGTTACTTGGAGTTACACCTACAGAGAGAGAAATTAGAAATATAGTTGAATGGCTTCTCAAAGACCATAGTGGAAGTACTGGTTTAAGTACGGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTTTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGATCACATATGGCCAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGATGACCAGGATGATGGAAGAATTATGCATCCAAGGTCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCATGGGAAGATGTAGAAATGGATGCCATACACTCGCTGCAATTAATATTACGAGGTTCTTTAAAGGATGAAGTTGAAGAAGAATGCAAAGTCATTACAAAAGTCCCATCAGTTGATGAGAAGACGCAACATGTAGATGAATTGCGTGTCATCACAAAGGAGATCATTCGCTTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAAGATCAATGGTTGGAACTCCAAAGCTACGGAGCTTACTGGATTGGCCATCCAGCAAGCCATTGGAATGCCCTTAGTTGATTGTCTGGTGTACGATTCCGTTCAGGTGGTAAAGAAAATGCTTTCCTTGGCCGTTAAAGGTATTGAAGAGAAGAACATCGAAATCAAACTCAAAACATTTGGAACTCAGGGACACGACGATCCAGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTTAACGATAATGTTGTAGGAGTTTGCTTTATAGGGCAGGATATTACTAAGAAAAAACTGGTAATGAACCAATACACTCAAATCCAAGGTGATTACACGGCGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGTTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGAAGAGATGACAAATATGATGCTGCTTGGGGAGGTTTTCACACTTGAAAATTCCGGTTGCCGTGTGAAAGATCAGACATTGACCAAGCTTAGGATTTTACTGCATACAGTAATTTCGGGCCAGGATACAGAGAAGTTATTGTTTAGGTTCTGTAATCGTGAAGGAAATTACGTTGAAACGTTGCTTACTGCTAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACATGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAATTGGCATATTTACGTCAAGAAATTCGAAAACCACTTGGTGGCATTACATTTATGCAGAATCTAATGGGTTCATCTGACTTGAGCAAAGAGCAAAAGCGATTACTTAAATTGAACACTTTGAGTCGGGAACAATTACTCAAAATTATAGATGATACCGATATCCAGAGTATCGAAGAATGTTACATGGAAACTAACTGTAGTAAATTCAACCTTGGAGATGTTCTTGATGTGGTAACAAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATTGTTTGTGAATTGCCTTCTGAAGCATCATCTCTGCACTTGTACGGAGATAACATGAGGCTACAACAAGTGCTCTCTCAGTTCTTGAGTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTCGTCTTCAAAACATCTCCACGGAAGGAGCGAATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGCACACTTAATTCGAGAGATGTTCGACGACAACAATGCTAGCTCAATGGAAGGTCTTGGCCTATACATCAGCCAAAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGTCGAAACCTCGTCATTCATCATCCTTGTAGAATTCCCCTTGGTATAA 3345 41.73 MSSTSTNKTACSKTSCDRMKHGAHVVIQTPIDAKLHVDFEGSERFFDYSASVDLNASSSRKHVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPVDVPVTAAGALKSYKLAAKAISKLQSLPSGSISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLSQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLLVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVRCDGAALYYKKKFWLLGVTPTEREIRNIVEWLLKDHSGSTGLSTDSLIEAGFYGAFALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPDDQDDGRIMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLKDEVEEECKVITKVPSVDEKTQHVDELRVITKEIIRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPLVDCLVYDSVQVVKKMLSLAVKGIEEKNIEIKLKTFGTQGHDDPVILEVNSCCSRDLNDNVVGVCFIGQDITKKKLVMNQYTQIQGDYTAIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMTNMMLLGEVFTLENSGCRVKDQTLTKLRILLHTVISGQDTEKLLFRFCNREGNYVETLLTASKRTDAEGNITGVFFFLHMASPELQYALEMQRMSEQATADNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLSKEQKRLLKLNTLSREQLLKIIDDTDIQSIEECYMETNCSKFNLGDVLDVVTNQIMILSQEREVKIVCELPSEASSLHLYGDNMRLQQVLSQFLSNTLLFTCKGSSVVFKTSPRKERIGKGIHIVHLELRITHPAPGIPAHLIREMFDDNNASSMEGLGLYISQKLVKIMNGTVQYLREVETSSFIILVEFPLV 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34312797 34320763 + Sed0016002.1 Sed05g2127 714753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2127 1114 CDD PAS 624 730 IPR000014 -
Sed05g2127 1114 SUPERFAMILY GAF domain-like 199 395 - -
Sed05g2127 1114 Pfam PAS fold 747 867 IPR013767 GO:0006355(InterPro)
Sed05g2127 1114 Pfam PAS fold 619 730 IPR013767 GO:0006355(InterPro)
Sed05g2127 1114 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Sed05g2127 1114 FunFam Phytochrome 954 1113 - -
Sed05g2127 1114 NCBIfam PAS domain S-box protein 760 866 IPR000014 -
Sed05g2127 1114 NCBIfam PAS domain S-box protein 620 734 IPR000014 -
Sed05g2127 1114 Gene3D PAS domain 74 322 - -
Sed05g2127 1114 Gene3D - 403 576 IPR043150 -
Sed05g2127 1114 CDD PAS 757 867 IPR000014 -
Sed05g2127 1114 Gene3D PAS domain 759 870 - -
Sed05g2127 1114 CDD HisKA 894 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g2127 1114 Gene3D - 934 1106 IPR036890 -
Sed05g2127 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1107 IPR036890 -
Sed05g2127 1114 PANTHER OS08G0260000 PROTEIN 1 993 - -
Sed05g2127 1114 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 732 IPR035965 -
Sed05g2127 1114 PIRSF Phytochrome_conventional 2 1114 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed05g2127 1114 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Sed05g2127 1114 SMART pas_2 615 681 IPR000014 -
Sed05g2127 1114 SMART pas_2 745 814 IPR000014 -
Sed05g2127 1114 SMART HKATPase_4 1001 1113 IPR003594 -
Sed05g2127 1114 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Sed05g2127 1114 FunFam Phytochrome 403 534 - -
Sed05g2127 1114 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Sed05g2127 1114 Gene3D PAS domain 601 744 - -
Sed05g2127 1114 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 ProSiteProfiles Histidine kinase domain profile. 896 1114 IPR005467 -
Sed05g2127 1114 Gene3D - 200 559 IPR029016 -
Sed05g2127 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1107 IPR003594 -
Sed05g2127 1114 Pfam GAF domain 223 397 IPR003018 GO:0005515(InterPro)
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Sed05g2127 1114 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Sed05g2127 1114 FunFam Phytochrome 609 740 - -
Sed05g2127 1114 SUPERFAMILY GAF domain-like 406 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2127 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed05g2127 Sed-Chr5:34312797 Sed05g2128 Sed-Chr5:34312797 0.00E+00 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40