Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2127 ATGTCTTCGACTTCGACAAATAAGACCGCATGTTCTAAGACGAGCTGCGACCGAATGAAACATGGAGCTCATGTGGTTATACAGACCCCAATTGATGCTAAGCTTCATGTGGACTTTGAGGGTTCAGAGAGGTTCTTTGATTACTCTGCCTCAGTTGATTTGAATGCCTCGAGTTCCAGGAAACATGTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTTTAGTTCAACCATTTGGTTGTATGATTGCTGTCGATGGGGAAAACTTGTCAGTCCTTGCATACAGTGAAAATGCTCCCGAAATGTTGGACTTGGCCCCTCATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGATCAGATGTACGAACACTTTTTCGCTCACCGGGAGCTGCTGCATTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTGGTCCATTGTAAAACTTCAGGTAAACCATTCTATGCAATTTTGCATCGAGTAGATGTGGGATTAATTATAGATTTGGAACCAGTGAATCCAGTTGATGTGCCAGTGACGGCAGCTGGAGCATTGAAATCTTATAAGCTAGCAGCGAAAGCCATCTCGAAATTGCAGTCCTTGCCGAGTGGGAGTATCTCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGTGATTTGACTGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTAGTAGCTGAGTGCTGCCGACCGGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTCAGGATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAGACAGAAGATTGTCTCAGCCATTAAGTCTATGTGGGTCTGCACTGAGGGCTCCTCATGGTTGTCATGCCCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCCATTACAATCAACGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGCTTATTAGTTTGTCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTAACTCAATCTCCCAATATTATGGATCTCGTTAGGTGTGATGGTGCTGCGTTATATTACAAAAAGAAATTTTGGTTACTTGGAGTTACACCTACAGAGAGAGAAATTAGAAATATAGTTGAATGGCTTCTCAAAGACCATAGTGGAAGTACTGGTTTAAGTACGGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTTTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATTACGTCTAAGGACTTCCTTTTCTGGTTTCGATCACATATGGCCAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGATGACCAGGATGATGGAAGAATTATGCATCCAAGGTCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCATGGGAAGATGTAGAAATGGATGCCATACACTCGCTGCAATTAATATTACGAGGTTCTTTAAAGGATGAAGTTGAAGAAGAATGCAAAGTCATTACAAAAGTCCCATCAGTTGATGAGAAGACGCAACATGTAGATGAATTGCGTGTCATCACAAAGGAGATCATTCGCTTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAAGATCAATGGTTGGAACTCCAAAGCTACGGAGCTTACTGGATTGGCCATCCAGCAAGCCATTGGAATGCCCTTAGTTGATTGTCTGGTGTACGATTCCGTTCAGGTGGTAAAGAAAATGCTTTCCTTGGCCGTTAAAGGTATTGAAGAGAAGAACATCGAAATCAAACTCAAAACATTTGGAACTCAGGGACACGACGATCCAGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTTAACGATAATGTTGTAGGAGTTTGCTTTATAGGGCAGGATATTACTAAGAAAAAACTGGTAATGAACCAATACACTCAAATCCAAGGTGATTACACGGCGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGTTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGAAGAGATGACAAATATGATGCTGCTTGGGGAGGTTTTCACACTTGAAAATTCCGGTTGCCGTGTGAAAGATCAGACATTGACCAAGCTTAGGATTTTACTGCATACAGTAATTTCGGGCCAGGATACAGAGAAGTTATTGTTTAGGTTCTGTAATCGTGAAGGAAATTACGTTGAAACGTTGCTTACTGCTAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACATGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAATTGGCATATTTACGTCAAGAAATTCGAAAACCACTTGGTGGCATTACATTTATGCAGAATCTAATGGGTTCATCTGACTTGAGCAAAGAGCAAAAGCGATTACTTAAATTGAACACTTTGAGTCGGGAACAATTACTCAAAATTATAGATGATACCGATATCCAGAGTATCGAAGAATGTTACATGGAAACTAACTGTAGTAAATTCAACCTTGGAGATGTTCTTGATGTGGTAACAAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATTGTTTGTGAATTGCCTTCTGAAGCATCATCTCTGCACTTGTACGGAGATAACATGAGGCTACAACAAGTGCTCTCTCAGTTCTTGAGTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTCGTCTTCAAAACATCTCCACGGAAGGAGCGAATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCAGGAATTCCTGCACACTTAATTCGAGAGATGTTCGACGACAACAATGCTAGCTCAATGGAAGGTCTTGGCCTATACATCAGCCAAAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGTCGAAACCTCGTCATTCATCATCCTTGTAGAATTCCCCTTGGTATAA 3345 41.73 MSSTSTNKTACSKTSCDRMKHGAHVVIQTPIDAKLHVDFEGSERFFDYSASVDLNASSSRKHVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGSDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPVDVPVTAAGALKSYKLAAKAISKLQSLPSGSISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLSQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLLVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVRCDGAALYYKKKFWLLGVTPTEREIRNIVEWLLKDHSGSTGLSTDSLIEAGFYGAFALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPDDQDDGRIMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLKDEVEEECKVITKVPSVDEKTQHVDELRVITKEIIRLIETAAVPILAVDVLGKINGWNSKATELTGLAIQQAIGMPLVDCLVYDSVQVVKKMLSLAVKGIEEKNIEIKLKTFGTQGHDDPVILEVNSCCSRDLNDNVVGVCFIGQDITKKKLVMNQYTQIQGDYTAIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMTNMMLLGEVFTLENSGCRVKDQTLTKLRILLHTVISGQDTEKLLFRFCNREGNYVETLLTASKRTDAEGNITGVFFFLHMASPELQYALEMQRMSEQATADNLHKLAYLRQEIRKPLGGITFMQNLMGSSDLSKEQKRLLKLNTLSREQLLKIIDDTDIQSIEECYMETNCSKFNLGDVLDVVTNQIMILSQEREVKIVCELPSEASSLHLYGDNMRLQQVLSQFLSNTLLFTCKGSSVVFKTSPRKERIGKGIHIVHLELRITHPAPGIPAHLIREMFDDNNASSMEGLGLYISQKLVKIMNGTVQYLREVETSSFIILVEFPLV 1114
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34312797 34320763 + Sed0016002.1 Sed05g2127 714753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2127 1114 CDD PAS 624 730 IPR000014 -
Sed05g2127 1114 SUPERFAMILY GAF domain-like 199 395 - -
Sed05g2127 1114 Pfam PAS fold 747 867 IPR013767 GO:0006355(InterPro)
Sed05g2127 1114 Pfam PAS fold 619 730 IPR013767 GO:0006355(InterPro)
Sed05g2127 1114 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Sed05g2127 1114 FunFam Phytochrome 954 1113 - -
Sed05g2127 1114 NCBIfam PAS domain S-box protein 760 866 IPR000014 -
Sed05g2127 1114 NCBIfam PAS domain S-box protein 620 734 IPR000014 -
Sed05g2127 1114 Gene3D PAS domain 74 322 - -
Sed05g2127 1114 Gene3D - 403 576 IPR043150 -
Sed05g2127 1114 CDD PAS 757 867 IPR000014 -
Sed05g2127 1114 Gene3D PAS domain 759 870 - -
Sed05g2127 1114 CDD HisKA 894 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed05g2127 1114 Gene3D - 934 1106 IPR036890 -
Sed05g2127 1114 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1107 IPR036890 -
Sed05g2127 1114 PANTHER OS08G0260000 PROTEIN 1 993 - -
Sed05g2127 1114 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 732 IPR035965 -
Sed05g2127 1114 PIRSF Phytochrome_conventional 2 1114 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Sed05g2127 1114 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Sed05g2127 1114 SMART pas_2 615 681 IPR000014 -
Sed05g2127 1114 SMART pas_2 745 814 IPR000014 -
Sed05g2127 1114 SMART HKATPase_4 1001 1113 IPR003594 -
Sed05g2127 1114 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Sed05g2127 1114 FunFam Phytochrome 403 534 - -
Sed05g2127 1114 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Sed05g2127 1114 Gene3D PAS domain 601 744 - -
Sed05g2127 1114 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed05g2127 1114 ProSiteProfiles Histidine kinase domain profile. 896 1114 IPR005467 -
Sed05g2127 1114 Gene3D - 200 559 IPR029016 -
Sed05g2127 1114 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1107 IPR003594 -
Sed05g2127 1114 Pfam GAF domain 223 397 IPR003018 GO:0005515(InterPro)
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Sed05g2127 1114 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Sed05g2127 1114 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Sed05g2127 1114 FunFam Phytochrome 609 740 - -
Sed05g2127 1114 SUPERFAMILY GAF domain-like 406 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2127 Sed-Chr5:34312797 Sed11g0823 Sed-Chr11:17778534 0.00E+00 dispersed
Sed05g2127 Sed-Chr5:34312797 Sed05g2128 Sed-Chr5:34312797 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2127 - - - 0.0