Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2136 ATGTCGGTTTCGCAAGCCCTAGGCGGCGCGTCCAGATGCGGCCGTGCGATCGGCCCTTCCCTCGACAAGATTGTCAAGAACGCGGCCTGGCGTAAGCATTCTAGCCTCGTCGCCTCCTGCAAATCCGTTCTCGACAAGCTCGATTCCATCGCCGAAGCTGCTCTTGATCCTGCCTCCCCGCTTGCCGGCCTTACACCCGCCGACGCGGAGTTCGTGCTCCAGCCGCTCCTCTTGGCTCTCGAGGCCGCCTACGTCAAGGTTGCCGAGCCCACGCTTGAGTGCATCTTCAAATTGTTCTCCCGCGGTCTTTTCCGCGGCGAGATCGAGGCGAGCTCTGGCGCTGGTTCCATTGCGTATAGGATAGTTGAGTCTGTTTGCAAGACGGGAGGCATTGGTGATGAAGGAATTGAGCTCACTGTTCTTAGAGTGTTGCTCTCTGCGGTTCGATGCCCTTGTCTGTTGCTCCGCGGGGATTGTTTGGTTAGTGTTGTTCGTACTTGTTATAATGTGTATGTTGGTGGCTTAAGCGGTACGAATCAGATCTGTGCAAAATCTGTTCTAGGTCAGATCATGGTCATTGTTTTCAGTAGGGTGGATGAGGACTCCATGGATGCTCCTACGAGGATAATTTCTGTGAGTGAATTATTGGAATTTAACGATAAGAACTTGAATGAAGGAAATTCTATATATTTTTGCCAGAACTTTATTAATGAGGTAATGGATGCCTGTGAAGGGATTGCGGACATGAAAAGATATTCGTTTTCGGGACAGAATGGCAATGCTTTGCCACTGAAAGCTGATAATAAAGGTGAATCTGATGTGGGAGAAACGGAGGATGGAGCCGAATCAGGTAGTTGTAGTAAGATTAGAGAGGATGGATTCCATTTGTTTAAGAATTTGTGTAAATTGTCAATGAAATTTTCATCACCGGAGCACCCAGATGATCAGATCCTCTTAAGGGGGAAAATATTGTCTCTGGAACTGCTAAAGGTGGTTATGGATAATGCAGGTCAAGTTTGGCGCTCTAACGAGAGGTTTCTCAATGCTATCAAGCAATTTCTCTGCTTATCCTTGTTAAAAAACAGCACCCTGTCGGCCATGGCCATCTTCCAGCTTCAATGTTCTATTTTTATGAGCTTGTTGACAAAATTTAGATCAGGATTGAAATCAGAAATTGGTATCTTTTTTCCAATGCTCGTCCTTCGAGTGCTTGAGAATGTACTTCAGCCTAGTTATTTGCAGAAAATGACCGTTCTCAATTTATTGGATAAGATATCTCAAGATTCACAGATTATGGTTGACATTTTTGTCAACTATGATTGTGATGTTGGTTCTCCAAATATTTTCGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCGTCTGGTTCAACCACAACATTGACTCCAGCACAGGATATTACATTTAGGCATGAATCTGTTAAGTGTTTGGTAAGTATCATTAAATCAATGGGAACTTGGATGGACCAACAACTGAAGCTAGATGATACATATCTTCTCAAGACTTCTGAGAGTGACGCTTCACTTGAGAATAATTTAAGTGGAGAAGAAACAACTGCTGTTGACTCAGAGCTCCAACCGGATGGAAGTTCTGAGTTCTCAGATACTGCTACTCTTGAGCAACGAAGAGCTTACAAAATTGAACTTGAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAAGGGTATTGAGTTTCTGATTAACACAAAAAAAGTGGGTGGTTCTCCTGAAGAAGTGGCTTCTTTTCTCAAGAATACCAACGGCCTAAATGAAACAGTCATTGGGGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAGACGATGGACTTTGGTGAAGCAATAAGGTTTTTCCTGCTAGGCTTCAAGTTACCAGGAGAGGCACAAAAGATCGACCGCATCATGGAGAAGTTTGCTGAGCGGTACTGTAAATGTAACTCCGGTTCATTCACAAGTGCAGATACTGCCTATGTTCTTGCTTATTCTGTAATTATGCTGAACACAGATGCTCATAATAACATGGTGAAAGATAAGATGACAAAAGGTGACTTTATCCGCAATAATCGAGGAATTGATGATGGCAAAGATTTACCTGATGAGTATCTTGGTGCACTTTATGATCAGATTGTTAGGAATGAAATTAAGATGAAATCTGATTCTTCAGCATCACAAAGTAACCAGGCAACCAGCATCAACAAGCTTTTGGCCTTGGATGGTATACTCAATCTAGTTTCCTGGAAGCAGACAGAGGAAAAAGCTGTCGGTGCAAACGGCCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCTGAATCTGTTTATCACGCTGTGACTGATGTAACAATACTAAGGTTTATGGTGGAAGTCTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTTGACCAAAGCAATGATAAACAGGCTACTTCTCAATGCTTACAAGGTGTTCGGCATGCTGTGCATGTTACAGCTGCCATGGGCTTGCAGACTCAAAGGGATGCTTTTGTGACATCCATGGCTAAGTTCACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAATGTTGAAGCTGTGAAGGCTATAATATCAATTGCTATAGAGGATGGTGATTTTCTTCAAGAGGCTTGGGAACACATATTTACATGTCTCTCAAGAATTGAGAACTTACAATTATTGGGAGAGGGTGCTCCATCTGATGCATCCTTTTTGACATCACCAAATATTGAAACTGAAGAAAAAGCGCTGAAATCAAGTTTATCATCTCTGAAGAAAAAGGGAGGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGCGGAGGTTCATACGACAGCGCCTCTATTGGAGTAAATACTCCCGGACCAGTAACACCTGATCAAATTAAGCACCTTATTTCAAACTTGAATTTGTTGGAACAAATAGGCAATTCTGAGTTGAACCACGTATTTGCTCATAGTCAAAATTTGAACAGTGAAGCAATAGTCGCATTTGTTCGGGCCCTTTGCAAAGTTGCTATTGCAGAGTTGCAGTCCCCAACAGACCCACGTGTGTTCAGCCTCACTAAATTAGTTGAAGTGGCGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGTATGTGGAGTGTTCTCTCTGATTTCTTTGTGTCAGTTGGCTTATCAGAGAATCTTTCAGTTGCAATATTTGTGATGGACTCTCTGAGGCAGCTCGCAATGAAATTTTTGGAGCGTGAGGAGCTTTCGAATTATAACTTTCAGAATGAATTTCTGAGACCTTTCGTAATTGTTATGCAGAAAAGCAGCTGCACTGAAATTAGGGAATTAATAGTTCGATGCATTTCACAGATGGTTCTCAGTCGCGTCAATAATGTGAAATCTGGATGGAAGAGCGTTTTTATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTGTTGGCTTTTGATACCATGGAAAAAATAGTTCGAGAATATTTCCCCTATATAACTGAGACTGAAACTACAACATTTACTGATTGCGTTCGATGTCTCATTACTTTCACAAATACCAGATTTAACAGCGATATCAGTCTCAATGCCATTGCGTTCCTTCGGTTTTGTGCTGTAAAACTTGCCGAAGGGGGACTTGTTTGCTACGAGATGGCTGGAGATAACGGTTCATCCACTTCTCCAGATGCACCCGCATCCACACCCGCACCCACAGATAAGGACGATTATGCTTCCTATTGGGTTCCTTTGCTTGCAGGGCTATCAAAGTTAACTTCTGATCCTAGATCACCAATCAGAAAAAGTTCTTTGGAAGTACTTTTTAATATCCTGAAGGATCATGGTCATCTTTTCTCGCGTCAATTTTGGGTTGGCGTTAACAACACCGTAGTTTTCCCCATATTCAGTTGTTTGCACGACAAGAAAGAACTGGACGAGAATGAAAATAATGAATATTCAGAAGGAGGAAGTACTTGGGACTCTGATACCAGTGCAGCGGCAGCAGATTGTTTAGTAGATATGTTCATTAGTTTCTTCAATGTAATAAGGTCTCAACTTTCTGGCGTGGTGTCGATCCTGACGGGTTACATTAGGAGCCCGATCCAAGGTTCTGCCAGCAGGGGCGTTGCTGGATTGATGCGTTTGGCAGGCGACTTGAGTACCAGGCTTAACGACAATGAATGGAGGGAGATTTTTCTTGGTTTGAAAGAAGCTGCCGCATTAACTGTGCCTGGGTTTATGAAGGTCCTGAGAATCATGGATAACGTCAACGTTCTCGGGATTTCTCAATCGTTGTATGATGAGGATGTGGATTCTGATCAAGGTTTGTCAACTGATGGTCTCAACGACGACGATTTGCAAACAGCCTCCTACATAGTTTCAAGAATGAAGGGTCATATCGCAATGCAACTCCTCATCCTACAGGTCATTACTGATTTGTACAAGAATCATACCCAACCTTTCTCAGAAGCCAACATTTCCATCATTATTGAGATCTTTTCTTCCGTTACCACACATTCACAGAAACTGAATTCCGAGGCAATCATTCTGAAGAAGCTAAAGAAAGCTTGCTCCATCCTGGAGATCTCCGACCCGCCCGTGGTTCACTTTGAAAACGAGTCATACCAAAGCTACCTCAACTTTCTCGAGACTATGCTTTCGAGTGATCCCTCGCTGGTTAATGCAGCTCTTGTAGAATCCGAACTTGTCACAGTATGTGAACAAATTTTGCATATCTACTTGAAGTGCACCGGGACACCGAGCGAGAAAAAAGAAGCCAACCAGCCTGTGCTACATTGGGTTCTTCCATTGGGCTCGACAAAGAAAGAGGAAGTGGCTGCTCGAACGTCCCTAGTTGTCTCGGCATTGCAGGCCGTACGCAGGTGCGAAAGGGGTCTATTTAAAAGGTGTGCTCAACAGCTTTTTCCATTGTTGGTAGATCTTGTAAGGAACAACCTAACAAAAATTAACAAAATGCCACACAATTTTACTATGAAATGCTAA 5091 43.04 MSVSQALGGASRCGRAIGPSLDKIVKNAAWRKHSSLVASCKSVLDKLDSIAEAALDPASPLAGLTPADAEFVLQPLLLALEAAYVKVAEPTLECIFKLFSRGLFRGEIEASSGAGSIAYRIVESVCKTGGIGDEGIELTVLRVLLSAVRCPCLLLRGDCLVSVVRTCYNVYVGGLSGTNQICAKSVLGQIMVIVFSRVDEDSMDAPTRIISVSELLEFNDKNLNEGNSIYFCQNFINEVMDACEGIADMKRYSFSGQNGNALPLKADNKGESDVGETEDGAESGSCSKIREDGFHLFKNLCKLSMKFSSPEHPDDQILLRGKILSLELLKVVMDNAGQVWRSNERFLNAIKQFLCLSLLKNSTLSAMAIFQLQCSIFMSLLTKFRSGLKSEIGIFFPMLVLRVLENVLQPSYLQKMTVLNLLDKISQDSQIMVDIFVNYDCDVGSPNIFERIVNGLLKTALGPPSGSTTTLTPAQDITFRHESVKCLVSIIKSMGTWMDQQLKLDDTYLLKTSESDASLENNLSGEETTAVDSELQPDGSSEFSDTATLEQRRAYKIELEKGISLFNRKPSKGIEFLINTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFKTMDFGEAIRFFLLGFKLPGEAQKIDRIMEKFAERYCKCNSGSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMTKGDFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMKSDSSASQSNQATSINKLLALDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVCWGPMLAAFSVTLDQSNDKQATSQCLQGVRHAVHVTAAMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGDFLQEAWEHIFTCLSRIENLQLLGEGAPSDASFLTSPNIETEEKALKSSLSSLKKKGGLQNPAVMAVVRGGSYDSASIGVNTPGPVTPDQIKHLISNLNLLEQIGNSELNHVFAHSQNLNSEAIVAFVRALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWSVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELSNYNFQNEFLRPFVIVMQKSSCTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFDTMEKIVREYFPYITETETTTFTDCVRCLITFTNTRFNSDISLNAIAFLRFCAVKLAEGGLVCYEMAGDNGSSTSPDAPASTPAPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVNNTVVFPIFSCLHDKKELDENENNEYSEGGSTWDSDTSAAAADCLVDMFISFFNVIRSQLSGVVSILTGYIRSPIQGSASRGVAGLMRLAGDLSTRLNDNEWREIFLGLKEAAALTVPGFMKVLRIMDNVNVLGISQSLYDEDVDSDQGLSTDGLNDDDLQTASYIVSRMKGHIAMQLLILQVITDLYKNHTQPFSEANISIIIEIFSSVTTHSQKLNSEAIILKKLKKACSILEISDPPVVHFENESYQSYLNFLETMLSSDPSLVNAALVESELVTVCEQILHIYLKCTGTPSEKKEANQPVLHWVLPLGSTKKEEVAARTSLVVSALQAVRRCERGLFKRCAQQLFPLLVDLVRNNLTKINKMPHNFTMKC 1696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34402296 34414579 - Sed0020334.1 Sed05g2136 714762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2136 1696 Pfam Mon2/Sec7/BIG1-like, HDS 1104 1186 IPR015403 -
Sed05g2136 1696 CDD Sec7 555 737 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Sed05g2136 1696 SUPERFAMILY ARM repeat 1074 1681 IPR016024 -
Sed05g2136 1696 Pfam Mon2/Sec7/BIG1-like, HUS domain 290 448 IPR032691 -
Sed05g2136 1696 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 630 748 - -
Sed05g2136 1696 ProSiteProfiles SEC7 domain profile. 548 735 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Sed05g2136 1696 Gene3D - 630 750 IPR023394 -
Sed05g2136 1696 Pfam Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain 20 201 IPR032629 -
Sed05g2136 1696 Gene3D - 540 629 - -
Sed05g2136 1696 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 17 1650 - GO:0005802(PANTHER)
Sed05g2136 1696 SMART sec7_5 552 737 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Sed05g2136 1696 SUPERFAMILY Sec7 domain 552 743 IPR035999 GO:0005085(InterPro)|GO:0032012(InterPro)
Sed05g2136 1696 MobiDBLite consensus disorder prediction 519 544 - -
Sed05g2136 1696 Pfam BIG2 C-terminal domain 1498 1681 IPR046455 -
Sed05g2136 1696 Gene3D - 1094 1318 IPR011989 -
Sed05g2136 1696 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 540 628 - -
Sed05g2136 1696 Pfam Sec7 domain 556 737 IPR000904 GO:0005085(InterPro)|GO:0032012(InterPro)
Sed05g2136 1696 MobiDBLite consensus disorder prediction 264 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2136 K18442 - - csv:101212521 2810.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2136 Sed-Chr5:34402296 Sed12g0239 Sed-Chr12:1379135 0.00E+00 dispersed
Sed04g3769 Sed-Chr4:46331151 Sed05g2136 Sed-Chr5:34402296 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33