Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2142 ATGGCTTTATCTACCTTCTCCAAAACAGCCCTCATCCTATCTGCAACTTTATTCATCAGTTACACCATCGCTCACGATTTCTCGATTGTGGGATATTCCCCCGAGCACTTAGCTTCCAGGGATAAAACCATTGAGCTGTTCGAAACGTGGATGTCAAAGCATAGTAAAACGTATCGGAGCATTGAAGAGAAGCTCCACAGGTTTGAGATATTCATTGACAATTTGAAGCACATTGATGAGACAAACAAGAAGGTTTCTTCTAGCTATTGGCTGGGGTTGAATGAATTTGCAGACCTGAGCCATGAAGAGTTTAAGAGTAAATATCTTGGATTGAAAGTAGAGTTTCCAAGGAAAAGGTCGGATCGTGGGTTTAGTTACAGAGACGTACAGGAATTGCCCGAGTCGGTCGATTGGAGAAGCAAAGGAGCTGTTAGTCCAGTCAAGAATCAAGGCTCATGTGGGAGTTGCTGGGCATTTTCAACTGTGGCAGCAGTGGAGGGGATAAATCAAATTGTCACGGGAAACCTAACCTCCTTGTCCGAACAAGAATTGATCGACTGTGACCGAAGCTTCAATAATGGATGCTATGGAGGTTTGATGGATTACGCTTTTCAATACATAATGTCAAATTCGGGACTACGGAAGGAGGAAGACTACCCATATCTAATGGAGGAAGGAAGATGTATCAGAGAAAAGGAGCAATTTGACACAGTGACCATTAGCGGTTACGAAGACGTGCCAGCAAACGACGAACAGAGTCTCCTAAAAGCATTGAGTCACCAACCTGTCAGTGTAGCCATTGAGGCTTCAGGCAGAAACTTCCAATTCTACAAAGGGGGAATATTCACAGGTCGTTGTGGAACCGACCTGGATCACGGTGTGGCAGCCGTAGGATATGGTTCATCAGAGGGAACAGACTACATCATTGTAAGGAACTCATGGGGGGCAAAATGGGGAGAAAATGGATATATTAGGATGAAGAGAAATACAGGAAAACCTGAAGGGCTATGTGGAATCAACAAAATGGCTTCTTATCCAACCAAAGAGAATTAA 1053 43.87 MALSTFSKTALILSATLFISYTIAHDFSIVGYSPEHLASRDKTIELFETWMSKHSKTYRSIEEKLHRFEIFIDNLKHIDETNKKVSSSYWLGLNEFADLSHEEFKSKYLGLKVEFPRKRSDRGFSYRDVQELPESVDWRSKGAVSPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRSFNNGCYGGLMDYAFQYIMSNSGLRKEEDYPYLMEEGRCIREKEQFDTVTISGYEDVPANDEQSLLKALSHQPVSVAIEASGRNFQFYKGGIFTGRCGTDLDHGVAAVGYGSSEGTDYIIVRNSWGAKWGENGYIRMKRNTGKPEGLCGINKMASYPTKEN 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34444587 34448110 - Sed0009135.1 Sed05g2142 714768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2142 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Sed05g2142 350 SUPERFAMILY Cysteine proteinases 41 347 IPR038765 -
Sed05g2142 350 SMART pept_c1 132 347 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2142 350 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2142 350 PRINTS Papain cysteine protease (C1) family signature 292 302 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2142 350 PRINTS Papain cysteine protease (C1) family signature 307 313 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2142 350 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 41 340 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Sed05g2142 350 Gene3D Cysteine proteinases 26 349 - -
Sed05g2142 350 Pfam Cathepsin propeptide inhibitor domain (I29) 47 104 IPR013201 -
Sed05g2142 350 CDD Peptidase_C1A 133 346 IPR039417 -
Sed05g2142 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 307 326 IPR025661 -
Sed05g2142 350 SMART Inhibitor_I29_2 47 104 IPR013201 -
Sed05g2142 350 Pfam Papain family cysteine protease 132 347 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2142 350 FunFam cysteine protease XCP2 26 349 - -
Sed05g2142 350 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 290 300 IPR025660 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2142 K16290 - - csv:101206340 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0511 Sed-Chr1:3896190 Sed05g2142 Sed-Chr5:34444587 3.00E-85 dispersed
Sed05g2077 Sed-Chr5:33981318 Sed05g2142 Sed-Chr5:34444587 9.60E-07 dispersed
Sed05g2078 Sed-Chr5:33981318 Sed05g2142 Sed-Chr5:34444587 8.20E-07 dispersed
Sed05g2142 Sed-Chr5:34444587 Sed05g2594 Sed-Chr5:37665252 1.30E-102 dispersed
Sed04g3776 Sed-Chr4:46381382 Sed05g2142 Sed-Chr5:34444587 3.90E-189 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54