Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2146 ATGAGAGAGGTTGAAGGGAGAAGGGTTTGCCAGGAGTTTTCAGCAGGGTATTATGGTCTTTGTGCTGTTGGAGGAATGCTCAGTGCTGGAACAACCCATCTTGCTATTACACCTCTGGATGTCTTGAAGGTTAATATGCAGGTTAATCCAATCAAGTACAATGGCATTTCTTCTGGTTTTTCCATTCTTTGGAGGGAACAAGGTCCTTCATCCCTTTGGAGAGGTTGGTCAGGCAAGTTATTTGGCTACGGTGTTCAAGGCGGTTTCAAATTCGGTCTCTACGAGTACTTTAAGAAGTTTTACTCTGATTTGCTGGAAGGCCATGGCAGAAGCTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTTTTTGCTGATGTTGCTCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTTCAGACACAACCCTATTATGCCAAGGGATTGGCTGATGGGTTTCCAAAGTTATACTACAGTGAAGGTCTTTCAGGTTTCTACAGAGGGCTTTTTCCACTTTGGGGGCGAAATCTTCCATTCTCCATGATTATGTTCTCAACATTTGAGCATTCAGTAGACTTCATATATCAAAATATCATTCAACGCAGAAAGGAAGATTGCTCAAGAATCCAACAGCTCGGCGTTACATGTTTAGCTGGCTATGCAGCTGGAGCTGTCGGTACTGTTGTCTCAAATCCGGCTGATAATATTGTTTCCTCTCTTTATAATAAAAAAGCTGATACTATAGTGCAGGCAGTGAAGAACATTGGATTTGGCAATTTATTTACTAGAAGCCTTCCTGTCAGAATTGCACTTGTTGGTCCTGCTGTTACTTTGCAATGGTTCTTCTATGACACCATTAAAGTTCTAAGTGGACTGCCTACAAGTGGAGGACTGAACAGGTTGTTGGAAGAGGCAAAACTACCAACTTAG 930 42.58 MREVEGRRVCQEFSAGYYGLCAVGGMLSAGTTHLAITPLDVLKVNMQVNPIKYNGISSGFSILWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHGRSSIYFLSSASAQVFADVALCPFEAVKVRVQTQPYYAKGLADGFPKLYYSEGLSGFYRGLFPLWGRNLPFSMIMFSTFEHSVDFIYQNIIQRRKEDCSRIQQLGVTCLAGYAAGAVGTVVSNPADNIVSSLYNKKADTIVQAVKNIGFGNLFTRSLPVRIALVGPAVTLQWFFYDTIKVLSGLPTSGGLNRLLEEAKLPT 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34471776 34477210 - Sed0025935.1 Sed05g2146 714772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2146 309 Pfam Mitochondrial carrier protein 21 102 IPR018108 -
Sed05g2146 309 Pfam Mitochondrial carrier protein 113 195 IPR018108 -
Sed05g2146 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 16 100 IPR018108 -
Sed05g2146 309 SUPERFAMILY Mitochondrial carrier 20 285 IPR023395 -
Sed05g2146 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 289 IPR018108 -
Sed05g2146 309 FunFam Mitochondrial phosphate carrier protein 1, mitochondrial 19 290 - -
Sed05g2146 309 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 8 298 IPR044677 GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro)
Sed05g2146 309 Gene3D Mitochondrial carrier domain 21 289 IPR023395 -
Sed05g2146 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 193 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2146 Sed-Chr5:34471776 Sed08g1540 Sed-Chr8:30270133 3.50E-88 dispersed
Sed05g2146 Sed-Chr5:34471776 Sed05g2147 Sed-Chr5:34471776 1.50E-179 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2146 K15102 - csv:101219895 578.556