Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2146 | ATGAGAGAGGTTGAAGGGAGAAGGGTTTGCCAGGAGTTTTCAGCAGGGTATTATGGTCTTTGTGCTGTTGGAGGAATGCTCAGTGCTGGAACAACCCATCTTGCTATTACACCTCTGGATGTCTTGAAGGTTAATATGCAGGTTAATCCAATCAAGTACAATGGCATTTCTTCTGGTTTTTCCATTCTTTGGAGGGAACAAGGTCCTTCATCCCTTTGGAGAGGTTGGTCAGGCAAGTTATTTGGCTACGGTGTTCAAGGCGGTTTCAAATTCGGTCTCTACGAGTACTTTAAGAAGTTTTACTCTGATTTGCTGGAAGGCCATGGCAGAAGCTCCATATACTTTCTCAGCAGTGCTTCTGCTCAAGTTTTTGCTGATGTTGCTCTCTGTCCTTTTGAAGCTGTCAAGGTCAGAGTTCAGACACAACCCTATTATGCCAAGGGATTGGCTGATGGGTTTCCAAAGTTATACTACAGTGAAGGTCTTTCAGGTTTCTACAGAGGGCTTTTTCCACTTTGGGGGCGAAATCTTCCATTCTCCATGATTATGTTCTCAACATTTGAGCATTCAGTAGACTTCATATATCAAAATATCATTCAACGCAGAAAGGAAGATTGCTCAAGAATCCAACAGCTCGGCGTTACATGTTTAGCTGGCTATGCAGCTGGAGCTGTCGGTACTGTTGTCTCAAATCCGGCTGATAATATTGTTTCCTCTCTTTATAATAAAAAAGCTGATACTATAGTGCAGGCAGTGAAGAACATTGGATTTGGCAATTTATTTACTAGAAGCCTTCCTGTCAGAATTGCACTTGTTGGTCCTGCTGTTACTTTGCAATGGTTCTTCTATGACACCATTAAAGTTCTAAGTGGACTGCCTACAAGTGGAGGACTGAACAGGTTGTTGGAAGAGGCAAAACTACCAACTTAG | 930 | 42.58 | MREVEGRRVCQEFSAGYYGLCAVGGMLSAGTTHLAITPLDVLKVNMQVNPIKYNGISSGFSILWREQGPSSLWRGWSGKLFGYGVQGGFKFGLYEYFKKFYSDLLEGHGRSSIYFLSSASAQVFADVALCPFEAVKVRVQTQPYYAKGLADGFPKLYYSEGLSGFYRGLFPLWGRNLPFSMIMFSTFEHSVDFIYQNIIQRRKEDCSRIQQLGVTCLAGYAAGAVGTVVSNPADNIVSSLYNKKADTIVQAVKNIGFGNLFTRSLPVRIALVGPAVTLQWFFYDTIKVLSGLPTSGGLNRLLEEAKLPT | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34471776 | 34477210 | - | Sed0025935.1 | Sed05g2146 | 714772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2146 | 309 | Pfam | Mitochondrial carrier protein | 21 | 102 | IPR018108 | - | |
Sed05g2146 | 309 | Pfam | Mitochondrial carrier protein | 113 | 195 | IPR018108 | - | |
Sed05g2146 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 16 | 100 | IPR018108 | - | |
Sed05g2146 | 309 | SUPERFAMILY | Mitochondrial carrier | 20 | 285 | IPR023395 | - | |
Sed05g2146 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 210 | 289 | IPR018108 | - | |
Sed05g2146 | 309 | FunFam | Mitochondrial phosphate carrier protein 1, mitochondrial | 19 | 290 | - | - | |
Sed05g2146 | 309 | PANTHER | SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED | 8 | 298 | IPR044677 | GO:0005315(PANTHER)|GO:0005315(InterPro)|GO:0031305(PANTHER)|GO:0035435(PANTHER)|GO:1990547(InterPro) | |
Sed05g2146 | 309 | Gene3D | Mitochondrial carrier domain | 21 | 289 | IPR023395 | - | |
Sed05g2146 | 309 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 109 | 193 | IPR018108 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2146 | Sed-Chr5:34471776 | Sed08g1540 | Sed-Chr8:30270133 | 3.50E-88 | dispersed | |
Sed05g2146 | Sed-Chr5:34471776 | Sed05g2147 | Sed-Chr5:34471776 | 1.50E-179 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2146 | K15102 | - | csv:101219895 | 578.556 |