Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2149 ATGAAAATGATTTGGCTCCTTTTGCTACTCATTTCTATTCAAGGGATTTCAGAAGGGGCCTCAAGACATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTGAATGGGAAAGTGTCAAAGATTGCCATAGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCCATATCCATTCATGATGCAAATTACAGTGGTTTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGAGACAGTTGCCATCATAGGTCCACAAGATGCTACAATGGCACACACACTCTCACATCTTTCAAATGAACTCCATGTCCCATTATTATCATACACCGCATTGGACCCGATGCTTTCGACTTCGCAGTATCCATACTTCATCCAAACAGCTCCAAATGATCACTTCCAAATGACTGCAATTGCAGATATCATTGGTTACTATGGTTGGCATGACATAGTAGTCGTTTACACCGATGATGATCAATTTCGAAACAATATGATTGCATTGGGGGATAAATTTGAAGAGAAAGGCTTGAAAATTTCCTCTAAAGTGGCACTTCCCCCTTACCCAACAGCAACTAGAACTCAAGTTCAAGATGCAATGCTCAAGATTAAAATGATGGAATCTCGAGTTATAGTATTGTGCACGTTTTCGAGAACAGGGTTCTTGGTTTTCGAAGTGGCTCGAAGCTTTAGAATGATGGAAGCTGGATTTGTTTGGATAACCACTAGTTGGCTTTCAACAGTCATGGATTCTCTTTCGCCGCTTCCTTCAAAAACTGCCAGTTCCATCCAAGGAGTTCTGACGCTTCGTCTACACACGCCTGATTCGAGACGAAAGCAGTTTTTTATATCGAATTGGAACAAGCTTTGTAATGGCTCTATTGGGTTGAATACTTATGGCCTATATGCATATGACACTGTTTGGATGATTGCAAAAGGATTAAAAGAGTTATTTGATCATAATGGCACAATCTCTTTCTCCAATGATGCGCATATTAGTAGTTTTAGACATAATGGAGAGAGCTTGGATTTTAATTCATTAGGCAGATTTGATGAAGGAAAGGAGCTGCTTAACAATTTATTGAATATCAGCATGATTGGTTTGACAGGTCCTATTCAGTTTCAAGATAGATCTCCTTTAAATCCATCATATGATATCTTAAATGTGTTGAAATCTGGTATGAAGAGAATTGGATACTGGTCCAACCATTCCGGGTTATCTCTTGTGGCGCCCGAAATGATGTATGGAAGATCAGCCCATCGTTCTAAGTCTTCCCCACAATTAAGCAGCATAGTGTGGCCCGGCGGATCGGGAATAAAGCCTCGTGGTTGGGTTCTCAATGGAAGGCGGTTAAGAATCGGCGTTCCACGCAGAGTTGGTTATCAAGAATTTGTGTCACCGGGAAATGGTAACGGCACAGTCAAAGGATACTGCATTGATGTGTTCACTGCTGCCATCCGTTTGCTTCCATATGTAGTTAGTTATGAATTTGTTTTGTTTGGAAATGGTGAGGAGAATCCTAGCTACTTTGATCTTGTAAATAATGTTGCATTGAAAAAATTTGATGCTGCTGTTGGTGACATTGCAATTGTGACGAGTCGGACAAAGGTTGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTCATGCTGGTCCCTGTCAAGAAGTTGAGTTCAAGTCCTTTGGCATTTTTTCGCCCATTCTCACGAATGATGTGGGTTGCCATAGGAGGCTCTTTTCTCCTCGTTGGATTTGTCGTGTGGATTTTGGAACATCGAAACAATGACGAATTCCGAGGACATCCTCGGACGCAATTTGTTACAATCCTTTGGTTTGGCTTCTCTACACTGTTTTTTTCACATAGAGAAAATGTCGTGAGCACGCTCGGGCGTTGCGTGCTTATCGTCTGGCTTTTTGTGGTTCTAATTGTCAACTCGAGCTACACCGCTAGTCTGACATCGATATTCACGGTACAACTAGCCTCACCTATCACGGGAATTGATTCATTGACATCTAGCAATGTACATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGAGAGCAACTTAACATCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCAGCCCTCACGAATGGAACGGTCGGAGCCATCATCGACGAACAGCCGTACATCGATCTCTTTCTCACCAAGCATTGCGATTTTTCAATCAATGGCCCACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGATTCCCAATTAGCAGTCGACCTCTCAACCGCGATTCTAACTCTATCAGAGAAAGGCGATCTTCAAGAAATCCACGAAAAATGGTTCTCAAAGAAATCGTGCAGTTCCGGCGGCGATTCCGATTTAGAACAGCTTCACTTACAGAATTTCATCGGCCTGTTCTTCATTTGCGCCGCCGTGTGTTTGTTCGCTCTTCTCCTTCACTTTCTCTTCACCACGTACCAATTCAACCGCCATTTGAAGCGAGATCCAGAAGCTTCCACCTCCGCAGCCGCCGGCGCTGGTTGTGCTTCTGGCTCTACGCATCTAAAGAGATTCTTGGCGTTTTCAGACAAGAAGAGGAATCGGAAGAAGAGTTCTTCGAAGAGGAAGCTCGATGATGATACGTTTTCGAGCGATGGGCATGACGCTTTTGAGAATTGA 2724 42.88 MKMIWLLLLLISIQGISEGASRHEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVSETVAIIGPQDATMAHTLSHLSNELHVPLLSYTALDPMLSTSQYPYFIQTAPNDHFQMTAIADIIGYYGWHDIVVVYTDDDQFRNNMIALGDKFEEKGLKISSKVALPPYPTATRTQVQDAMLKIKMMESRVIVLCTFSRTGFLVFEVARSFRMMEAGFVWITTSWLSTVMDSLSPLPSKTASSIQGVLTLRLHTPDSRRKQFFISNWNKLCNGSIGLNTYGLYAYDTVWMIAKGLKELFDHNGTISFSNDAHISSFRHNGESLDFNSLGRFDEGKELLNNLLNISMIGLTGPIQFQDRSPLNPSYDILNVLKSGMKRIGYWSNHSGLSLVAPEMMYGRSAHRSKSSPQLSSIVWPGGSGIKPRGWVLNGRRLRIGVPRRVGYQEFVSPGNGNGTVKGYCIDVFTAAIRLLPYVVSYEFVLFGNGEENPSYFDLVNNVALKKFDAAVGDIAIVTSRTKVVDFTQPYIDSGLVMLVPVKKLSSSPLAFFRPFSRMMWVAIGGSFLLVGFVVWILEHRNNDEFRGHPRTQFVTILWFGFSTLFFSHRENVVSTLGRCVLIVWLFVVLIVNSSYTASLTSIFTVQLASPITGIDSLTSSNVHIGFQVGSFAESYLREQLNIQKSRLIALGSPEEYAAALTNGTVGAIIDEQPYIDLFLTKHCDFSINGPQFTKSGWGFAFPRDSQLAVDLSTAILTLSEKGDLQEIHEKWFSKKSCSSGGDSDLEQLHLQNFIGLFFICAAVCLFALLLHFLFTTYQFNRHLKRDPEASTSAAAGAGCASGSTHLKRFLAFSDKKRNRKKSSSKRKLDDDTFSSDGHDAFEN 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34485877 34490890 - Sed0017858.1 Sed05g2149 714775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2149 907 Gene3D - 572 711 - -
Sed05g2149 907 SUPERFAMILY Periplasmic binding protein-like I 20 454 IPR028082 -
Sed05g2149 907 MobiDBLite consensus disorder prediction 888 907 - -
Sed05g2149 907 MobiDBLite consensus disorder prediction 879 907 - -
Sed05g2149 907 FunFam Glutamate receptor 697 800 - -
Sed05g2149 907 Pfam Bacterial extracellular solute-binding proteins, family 3 477 581 IPR001638 -
Sed05g2149 907 Gene3D - 722 803 - -
Sed05g2149 907 Pfam Receptor family ligand binding region 43 399 IPR001828 -
Sed05g2149 907 Gene3D - 455 571 - -
Sed05g2149 907 FunFam Glutamate receptor 456 572 - -
Sed05g2149 907 FunFam Glutamate receptor 572 701 - -
Sed05g2149 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 885 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed05g2149 907 SMART GluR_14 462 798 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed05g2149 907 Gene3D - 141 416 - -
Sed05g2149 907 SUPERFAMILY Periplasmic binding protein-like II 450 798 - -
Sed05g2149 907 Gene3D - 44 391 - -
Sed05g2149 907 PIRSF IGluLR_plant 1 904 IPR017103 -
Sed05g2149 907 CDD PBP1_GABAb_receptor_plant 27 420 IPR044440 -
Sed05g2149 907 FunFam Glutamate receptor 141 306 - -
Sed05g2149 907 CDD GluR_Plant 459 796 - -
Sed05g2149 907 Pfam Ligand-gated ion channel 798 827 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2149 Sed-Chr5:34485877 Sed10g0515 Sed-Chr10:3349165 2.30E-265 dispersed
Sed04g3783 Sed-Chr4:46405678 Sed05g2149 Sed-Chr5:34485877 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2149 K05387 - csv:101208602 1337.4