Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2162 ATGGCATCGGCGCAGAATCCAGCGCTGAACGTAGATCTCTTCGATTCCTACTTTCGACGTGCCGATTTGGACCGGGATGGTCGAATTAGTGGCGCTGAAGCGGTTGCGTTCTTTCAAGGCTCTGGATTGCCCAAACAGGTTCTTGTTCAGATCTGGGCTCTTTCGGACCGGAGACAGATTGGTTTTCTCGGTCGGGCTGAGTTTTATAATGCCCTTAGGCTGGTCACTGTAGCACAGAGTAAGAGGGAGCTAACTCCTGATATTGTGAAAGCTGCATTGTATAGCCCAGCTGCAGCTAAAATACCAGCTCCACAAATAAATTTAAATACCCTGCCTGCATCTCATTTCAATTCTACTCCAGCATTACCTACACCTCAGAGTGGCATTGGTACTCCAACTCCCTCTCAAAGTTCTGGGTTGGAATCGCAGGTTGCTCGAAATGCCGCTACGAATCTTCAGCTGGTTCCGTCTAAAGAGAATCAATCAGTAAGGCCTTCCTTGGCAACTTCAAATTCTTCTCCCCATCTATCACATGGATATCCAGGAGTAGGTAACATAGCGGGGACGCCTCCAACAAATCCTAGCATCTTGAATGCTGGTGGGGTTCAGGGGACACCCTCACAACCTCCAGTTAGAGGAGCTAGTCCTGCTGGAACACAGGTCGGATTTGGCCAATCAAGTGTAGGATTAACAACCCCTCTACCCCCAAGGCCTCAGACCGCTCCTGGAACAAAGGCGGCTACACCATCACCTTTGGATAGTAAAGTGCAAGGTTTTTCTGGAAATGGGACTGCTTCTGGATCATATTTTGGAGAAGATCTCTTTGCTGCAAGCCCAGTACCCTCAAAGCAAGATGTCCCCTCAGATAAACTGCCTGCTGGCAATCAAACTTCCACATTAGTAACTGTTCCTGTACCTTCTGCCACACAACCAATGGTTAGAGCAGGTTCCCTTGATTCCTTGCAAAATTCATTAATGAAACCGCCTCTTGGTAATCAGCCCCCACGGAATCAGCCACTTGGGAAGCCCAATCAACAGAGCTTATCACAACCTTCTTCCTCTGGATTATCAACAGGATCTCAGAACTCTGCTTCTGGTCAGTCTCAGCGCCCTTGGCCTAGAATGACACAGGCTGACGTGCAGAAGTATACTAAAGTTTTTGTTGAGGTGGATAAAGATAGAGATGGAAAAATCACTGGTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAGACTGCCAAGAGAGGTTTTAATGCAAGTGTGGGACTTATCCGATCAAGATAATGATGGCATGCTTTCTGTCAGGGAGTTTTGTATTGCACTCTATTTGTTGGAGCGGCATAGGGAAGGGCACATTCTTCCTGCTATGCTTCCTAGCAACCTCGTGTTTGATTTTGCCAGCAACGGTCATCCAGTGACTCCAGCTGCATCTAACTATAGCAATGCAAATTGGAGACCCGCAGCTGGTCACCAACAGCACCAAGGGGTTCCTGGATCTGGTAATCTGCATGGAGCTCCTGCAGGTAGAATACGACAACATATACCTGCTGCTGTCTCCCCGGTTGAAAATGAGCCACAGACCAATCAACCTAAATCAAAGGTTCCTGTGCTGGAGAAAAATCTTGTCAATCAACTTAGTACAGAGGAGCAGAACTCCCTCAATACAAAGTTCCAAGAAGCAGCAGATGCTGCGAAAAAGGTTGAAGAATTGGAGAAAGAAATTTTGGATTCTAGACAGAAAATTGAGTTTTATCGTACGAAAATGCAGGAACTCGTTTTGTACAAGAGCAGATGTGACAATCGGCTGAATGAAATATCTGCAAGAGTGTCTTCAGATAAACGTGAGGTCGAGTCCCTGACTAAGAAATATGAAGAGAAATATAAACAATCTGGTGATGTAGCCTCCAAATTAACTGTTGAAGAAGCTACATTCCGTGATTTACAGGAAAAGAAGATGGAACTGTATCAGGCGATTGTGAAAATGGAACAAGGTGGTAGTGAAGATGGCATTCTTCAGGTTCGTGCGGATCAAATTCAAGCAAATATTGAAGAATTAGTGAAAGCTCTCAAAGAACGCTGCAAGAGTTATGGTTTGCATGCAAAATCAGTAATTCTGAGTGAACTTCCTTCCGGTTGGCAACCTGGCATTCAAGAGGGAGCTGCCGACTGGGATGAAGATTGGGATAAATTTGAAGACGAAGGTTTCACTTTGGACAAGGAGCTCACTCTTGATGTGCAAAATGTCACAAAGCAGAAAACTAAGTCAGTGCAAAAAGAAAAAGGTTCAGCCGTTGACAGCCAAAAAGTTACACCTGCACTAGATGCTAATACCAAGGATGAATCAGCTGTTGAAAATGGTTCGGCACATGATAATAAAAGTGAAGATGGGTCAGCCAGAAGTTCTCCTAACAGCCCATTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATAATATGGATTCCAGTTTTGGAAAGTCTGCTGGCTTTGATGCTTCACCCCGAGATAAGGACGCTCTAAGTGATCATGGAGGTGCGGGATCTGTGTTTTCTGGTGACAAGAGCTTTGACGAACCAGCTTGGGGAACCTTTGATGCAAATGATGATGTTGACTCTGTTTGGGGCTTTAACGCTGGAGGTTCCACTAAGACCAACAACGATGTTAACCGAGACAGCTATTTTTTCGATTCTGGGGAGTTGGGCTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGAAAAGCACATTTGCTTTTGACGAGTCTGTTCCTAGCACCCCGTTTTCACCACACAATTACCGCGAGGGATCAGAATCAAATTTTGACAGCTTCTCAAGGTTTGATTCTTCCAGTGTGCATGACAGTGGTTCTTTCCCTCCACGAGACACGTTTGCACGGTTTGACTCAATGCGCAGCACTAGAGACTTTGACCAGGGTCATGGATTCTCATCGTTTGGTCAATTCGATTCACCAAAAAGCAGTAGAGACTTCAATCAGGGTGGATCCTCGTTGACACGCTTTGATTCAATGCGTAGCAGTAAAGATTTCGATCAGGGATTCCCTTCATCATTATCACGATTTGATTCAAGGCGCAGCAGCAAGGATTTCGATCAGGGATACCCTTCATCATTATCACGATTTGATTCAAGGCGCAGCAGCAAGGATTTTGATCAGGGATTCCCTTCGATGACACGATTTGATTCAATGCGCAGCAATGCAGATTTTGATCAAGGTCACGGATTCTCATCATTTGATGATCATCCAGATCCTTTTGGATCGACGGGGCCGTTCAGGGCATCCCTGGATAATCAAACTCCGAAGAAAGGATCGGATAAGTGGAATGCATTTTAG 3348 45.37 MASAQNPALNVDLFDSYFRRADLDRDGRISGAEAVAFFQGSGLPKQVLVQIWALSDRRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALYSPAAAKIPAPQINLNTLPASHFNSTPALPTPQSGIGTPTPSQSSGLESQVARNAATNLQLVPSKENQSVRPSLATSNSSPHLSHGYPGVGNIAGTPPTNPSILNAGGVQGTPSQPPVRGASPAGTQVGFGQSSVGLTTPLPPRPQTAPGTKAATPSPLDSKVQGFSGNGTASGSYFGEDLFAASPVPSKQDVPSDKLPAGNQTSTLVTVPVPSATQPMVRAGSLDSLQNSLMKPPLGNQPPRNQPLGKPNQQSLSQPSSSGLSTGSQNSASGQSQRPWPRMTQADVQKYTKVFVEVDKDRDGKITGQEARNLFLSWRLPREVLMQVWDLSDQDNDGMLSVREFCIALYLLERHREGHILPAMLPSNLVFDFASNGHPVTPAASNYSNANWRPAAGHQQHQGVPGSGNLHGAPAGRIRQHIPAAVSPVENEPQTNQPKSKVPVLEKNLVNQLSTEEQNSLNTKFQEAADAAKKVEELEKEILDSRQKIEFYRTKMQELVLYKSRCDNRLNEISARVSSDKREVESLTKKYEEKYKQSGDVASKLTVEEATFRDLQEKKMELYQAIVKMEQGGSEDGILQVRADQIQANIEELVKALKERCKSYGLHAKSVILSELPSGWQPGIQEGAADWDEDWDKFEDEGFTLDKELTLDVQNVTKQKTKSVQKEKGSAVDSQKVTPALDANTKDESAVENGSAHDNKSEDGSARSSPNSPFASSVIGSPKEYNMDSSFGKSAGFDASPRDKDALSDHGGAGSVFSGDKSFDEPAWGTFDANDDVDSVWGFNAGGSTKTNNDVNRDSYFFDSGELGLNPIRTDPFQAKKSTFAFDESVPSTPFSPHNYREGSESNFDSFSRFDSSSVHDSGSFPPRDTFARFDSMRSTRDFDQGHGFSSFGQFDSPKSSRDFNQGGSSLTRFDSMRSSKDFDQGFPSSLSRFDSRRSSKDFDQGYPSSLSRFDSRRSSKDFDQGFPSMTRFDSMRSNADFDQGHGFSSFDDHPDPFGSTGPFRASLDNQTPKKGSDKWNAF 1115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34536328 34546727 - Sed0023090.1 Sed05g2162 714788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2162 1115 MobiDBLite consensus disorder prediction 322 376 - -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 982 1115 - -
Sed05g2162 1115 SMART efh_1 416 444 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 SMART efh_1 382 410 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 SMART efh_1 13 41 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 188 234 - -
Sed05g2162 1115 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 117 264 - -
Sed05g2162 1115 CDD EH 14 80 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 797 820 - -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 289 306 - -
Sed05g2162 1115 ProSiteProfiles EH domain profile. 379 462 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 982 1026 - -
Sed05g2162 1115 CDD Prefoldin 567 687 - -
Sed05g2162 1115 Gene3D - 354 463 - -
Sed05g2162 1115 SMART eh_3 6 98 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 SMART eh_3 371 467 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 SUPERFAMILY EF-hand 11 93 IPR011992 -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 1055 1077 - -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 243 264 - -
Sed05g2162 1115 Coils Coil 602 622 - -
Sed05g2162 1115 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Sed05g2162 1115 Gene3D - 9 99 - -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 322 375 - -
Sed05g2162 1115 CDD EH 383 449 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 117 178 - -
Sed05g2162 1115 Pfam Cytoskeletal-regulatory complex EF hand 373 462 IPR000261 GO:0005515(InterPro)
Sed05g2162 1115 PANTHER EH DOMAIN 9 940 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Sed05g2162 1115 MobiDBLite consensus disorder prediction 1096 1115 - -
Sed05g2162 1115 Coils Coil 553 587 - -
Sed05g2162 1115 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 Pfam EF hand 15 33 IPR002048 GO:0005509(InterPro)
Sed05g2162 1115 SUPERFAMILY EF-hand 368 462 IPR011992 -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 753 851 - -
Sed05g2162 1115 MobiDBLite consensus disorder prediction 279 310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2162 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3789 Sed-Chr4:46438933 Sed05g2162 Sed-Chr5:34536328 0.00E+00 dispersed
Sed05g2160 Sed-Chr5:34518734 Sed05g2162 Sed-Chr5:34536328 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41