Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2175 ATGGAGCGAGCAACAAGGCTCTCAAAAGCCATTCACCAGAATTCCAACAGCCCCAAACTAGCATGGCTTCTCTTCAAGCAAATCCTCTCTCCCCCAATCGCCGCCTCATCTTCCTTCTTCAAAATCTCTCTTCAATCCGTTCCCGTAATTGCCCGCATCCTCATCGCTGCAAAGCTGCACCCACAGATCGATCATCTTCACCAACTCCTCTTGTGGCAACATCCCGATTTCGCTTATCCATCTGGGTTGGCTCTCGTTCGCGCGCTGGCCGATTCGGGTCTCTTCGAAATCGCCATTTCTCAGTTCAGATCCCTTCGAGCCAGGTTTCCTCACCACCCTCCTGCTGTTTCTTTCTATAATTTTCTCTTTCAGTGCTCTTTGATGGATTGTCGTGTTGATTTTGTGATTTGGCTTTATAAGGATATGATTGCTGCGAGAGTGAATCCACAGACTTATACTTTTAATTTGTTGATTCGGGCGTTATGTGAAATGGGGTGCTTGGAGAATGCACGGGAGGTGTTTGATAAAATGTCTGAGAAAGGGTGTAAGCCTAATGAGTTTAGTATTGGGATTTTGGTTCGTGGGTATTGTAGAGCTGGGCTTCCTTTTCGAGGCGTTGAGTTTTTGGATGAGATGAGGAGCTCTGGTGGTACTGTTCCCAATAGGGTTGCCTACAATACTGTGATATCTTCTCTATGTGCACAAGGTCATACTGGGGAGGCTGAGAAATTGGTGGAAAGTATGAGAGAGGTTGGTCTTTCTCCAGATATTGTAACTTTCAATTGTAGGATTGCTGCCCTTTGTAAATCTGGGCAAATTTTAGAAGCTTCTAGAATTTTTAGAGATATGCAAATAGATGAAGATTTGGGGTTGCCTCAGCCTAATATTGTAACATATAATTTAATGCTGAAAGGGTTTTGTAATGAAGGAATGTTTGAGGAATCCAAGGCTCTCTTTGATTCTATGAAACGTTCTGAAACTCCCTTGAGCTTGGAGAGCTATAACATTTGGTTGTTAGGTTTGGTTAGATGTGGAAAGCTGCTCGAAGCTCGTTTGGTTCTTAATGAGATGGCGGAAAAGCATATAAAACCTAGTCTTTACTCGTATAACATTTTGATATATGGACTTTGTAAATATGGAATGTTTTCTGATGCAAGATCTATAATGGAACTAATGGGAGAGAGTGGTGTAGCTCCAGATACTGTAACTTATAGTACGTTACTGCATGGATATAGCCGTAAAGGAAAGATACTTGATGCCAATTACGTTCTCCGCGAAATGATACAGGTGGGTAGTTTTCCCAACATGTATACTTGCAACATTCTGCTTCACAGCCTGTGGAAAGAGGGGAAAGCATCAGAGGCCGAAGAGTTGCTACAAAAGATGAATGAAAGAGGCTATAGCTTGGATAATGTAACATGTAATACAATGATTAATGGCCTCTGTAAAACTGGGAATCTGGACAAAGCTATTGAAATAGTAAGTGGCATGTGGACCGATGGAAGCGCTTCTCTTGGTAATCTGGGGAACTCTTTTATCGATCTTTTTGATGTTGGTAATAGTGGGAAAAGGTGTTTGCCTGACTCGATCACATATGCAACCATAATAAGTGGGTTATGTAAGGAAGGGCGGGTTGATGAAGCAAAAAACAAGCTTCTGGAAATGATCGGGAAAAATATATCTCCCGATTCACTGATATTCGATACTTTCATACATAGTTACTGTAAACAAGGAAAGCTATCATCTGCTTTTAGAGTTCTAAAAGAAATGGAGAAAAAAGGTTGCAACAAGACCCTTCGAACGTACAATTCACTGATACAGGGTTTAGGTAGTAAAAATCAAATATTTGAAATATATGGGTTGATGGATGAGATGAAAGAAAAAGGAATTTCTCCTAATGTGTACACTTATAATAACATTATTAGCTGCCTATCTGAAGGTGGGAAACTGAAAGATGCCACTTGCCTTTTGGATGAAATGCTGCAGAAGGGGATATCTCCTAATGTACATACATTTAGGATTTTAGTTGGAGCTTTCTTCAAGGCTAGCGACTTTGGAGCTGCTCAAGAGTTATTTGAGATTGCTTTAAGCATATGTGGTCACAATGAATCCTTGTATAGTTTTATGTTCAATGAGCTTCTAGCTGGAGGTGAAATATCCAAGGGTAAAGAGCTTTTTGAAGCTGCATTAGATAGATCTCTAGCCTTGAAAAATTTTCTTTACAGGGACCTGATTGAAAGGCTCTGCAAGGATGGAAAGTTAGACGATGCTACTTTCATTCTTCATAAGATGATGGATAAGCAGTATAGGTTTGATCCTGCAGCATTCATGCCAGTGATTGATGGATTAGGTAAAAAAGGGAACAAGCATGCAGCTGATGAGTTTGCAGAAAGAATGATGGAAATGGCTTCAGAAACCGGTGTCCACCAACACGAGAGTAAAAATGTCCGAGGAAGATCAGATAATAATGATGATGATTGGCACAAGATAGTTCACAGAAACGATGGCAGTGGGATTGCACTGAAAACTCTGAAGCGGGTGTTGAAAGGATGGGGTCAAGGAAGTATTTCAACTTCACAGCCACAGAAATTTACCACACATGATTACTGGGATGGTGATACTTAA 2625 40.88 MERATRLSKAIHQNSNSPKLAWLLFKQILSPPIAASSSFFKISLQSVPVIARILIAAKLHPQIDHLHQLLLWQHPDFAYPSGLALVRALADSGLFEIAISQFRSLRARFPHHPPAVSFYNFLFQCSLMDCRVDFVIWLYKDMIAARVNPQTYTFNLLIRALCEMGCLENAREVFDKMSEKGCKPNEFSIGILVRGYCRAGLPFRGVEFLDEMRSSGGTVPNRVAYNTVISSLCAQGHTGEAEKLVESMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEDLGLPQPNIVTYNLMLKGFCNEGMFEESKALFDSMKRSETPLSLESYNIWLLGLVRCGKLLEARLVLNEMAEKHIKPSLYSYNILIYGLCKYGMFSDARSIMELMGESGVAPDTVTYSTLLHGYSRKGKILDANYVLREMIQVGSFPNMYTCNILLHSLWKEGKASEAEELLQKMNERGYSLDNVTCNTMINGLCKTGNLDKAIEIVSGMWTDGSASLGNLGNSFIDLFDVGNSGKRCLPDSITYATIISGLCKEGRVDEAKNKLLEMIGKNISPDSLIFDTFIHSYCKQGKLSSAFRVLKEMEKKGCNKTLRTYNSLIQGLGSKNQIFEIYGLMDEMKEKGISPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNVHTFRILVGAFFKASDFGAAQELFEIALSICGHNESLYSFMFNELLAGGEISKGKELFEAALDRSLALKNFLYRDLIERLCKDGKLDDATFILHKMMDKQYRFDPAAFMPVIDGLGKKGNKHAADEFAERMMEMASETGVHQHESKNVRGRSDNNDDDWHKIVHRNDGSGIALKTLKRVLKGWGQGSISTSQPQKFTTHDYWDGDT 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34594770 34600070 + Sed0027220.1 Sed05g2175 714801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Sed05g2175 874 MobiDBLite consensus disorder prediction 854 874 - -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 258 284 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 189 221 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 530 564 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 297 325 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 223 257 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 635 669 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 601 634 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 152 186 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 367 401 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 402 435 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 333 365 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 437 470 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 472 501 IPR002885 -
Sed05g2175 874 NCBIfam pentatricopeptide repeat 567 595 IPR002885 -
Sed05g2175 874 Pfam PPR repeat 524 555 IPR002885 -
Sed05g2175 874 Pfam PPR repeat 558 591 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Sed05g2175 874 PANTHER ATPASE EXPRESSION PROTEIN 3 19 497 - -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Sed05g2175 874 Pfam PPR repeat 741 767 IPR002885 -
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 593 701 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 702 812 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 290 361 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 200 289 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 56 199 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 SUPERFAMILY TPR-like 136 731 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 184 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 507 592 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 362 429 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 Gene3D Tetratricopeptide repeat domain 430 499 IPR011990 GO:0005515(InterPro)
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 633 667 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 286 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Sed05g2175 874 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 294 336 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 434 483 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 220 262 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 149 198 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 368 412 IPR002885 -
Sed05g2175 874 Pfam PPR repeat family 601 645 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2175 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2175 Sed-Chr5:34594770 Sed12g0049 Sed-Chr12:308357 2.50E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g286 . . . . . . . . . . . . . . Sed05g2175 . . Bhi05g01588 Tan02g0581 Cmetu01g0188 Lac12g0483 Hepe02g0372 . . Cla02g00351 Cam02g0359 Cec02g0360 Cco02g0366 Clacu02g0351 Cmu02g0348 Cre02g0679 Cone12ag1274 . . . . Csa07g00182 . Cme01g01150 Blo04g00604 . . Bda14g00645 Bpe15g00786 . Bma03g00636 . . . . . . . Car19g00612 . . . . . . . . . . . . . . . . Lsi11g01282 . Chy01g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012269 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29