Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2176 ATGAATCCAACCATCAACTCCGTCGCCGTCGCCACTCCGCTGGACCTCAGTACTTTCAACTCCATCTCCCCCTCCAACCGCCGCCACAACCCGCGCAAGAATCGATCCAGAAACGAAACAAACTCCTCCTCCTCCTCCGCCACCACCGTTGCCGTCGCTGTTGGTTCCAAGGCCAAGCACAGCAAGAAGCCGGATCCAAACCTGCCGAAGATCACTCCGCCGTGTACTGAGTGCGGGAAGAGATTCTGGTCGAACAAAGCGCTATTCGGTCACATGAGGTGTCATCCAGAGCGGCAATGGCGAGGGATTAATCCGCCGATCAGCTTCCGCCGCTCTAGCCCTAATTTCGACGAGTCGTCGATTACGGATGAGGATCAGATCCTCGCTGATTGCTTGATTATGCTCGCGAATGAAAGCCCTAACTTATTCGAGTGTTCGAATTGTAAGAAAGTGTTTGGATCGCAGCAGGCGCTCGGAGGACACAGGGCGAGTCATAAGAATGTGAAAGGCTGCTTCGCCATAGCCAAGAGCGACGAGGAAATGGAGAAAAATGGTGTGTTTAGGGCGATTTCGAGAAGAACCGGACACGAGCATGAGCGTAGATTATGTGTTGATTTGGATTTGAACATGCCTGCTCCTGTTGAAGATAATGATGGCTCATGTTTTTCATATTCTTCTTGCCTCACTCTGGATCTCAGATTCAAGTTTGGCCGGCAATCTGTCAAATTTCCTTTTCTTTTTTTTTTGAAAATCGAGAAATCGGAACTTCGCTCTCCAATACCCGGGGCACCACTGACCCGTCCCTAG 807 50.93 MNPTINSVAVATPLDLSTFNSISPSNRRHNPRKNRSRNETNSSSSSATTVAVAVGSKAKHSKKPDPNLPKITPPCTECGKRFWSNKALFGHMRCHPERQWRGINPPISFRRSSPNFDESSITDEDQILADCLIMLANESPNLFECSNCKKVFGSQQALGGHRASHKNVKGCFAIAKSDEEMEKNGVFRAISRRTGHEHERRLCVDLDLNMPAPVEDNDGSCFSYSSCLTLDLRFKFGRQSVKFPFLFFLKIEKSELRSPIPGAPLTRP 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34604681 34606248 - Sed0016743.1 Sed05g2176 714802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2176 268 MobiDBLite consensus disorder prediction 37 52 - -
Sed05g2176 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Sed05g2176 268 SMART c2h2final6 143 165 IPR013087 -
Sed05g2176 268 SMART c2h2final6 73 95 IPR013087 -
Sed05g2176 268 Pfam C2H2-type zinc finger 143 166 IPR013087 -
Sed05g2176 268 Pfam C2H2-type zinc finger 75 97 IPR013087 -
Sed05g2176 268 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Sed05g2176 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Sed05g2176 268 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 24 233 - -
Sed05g2176 268 SUPERFAMILY beta-beta-alpha zinc fingers 74 165 IPR036236 -
Sed05g2176 268 Gene3D Classic Zinc Finger 74 165 - -
Sed05g2176 268 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Sed05g2176 268 MobiDBLite consensus disorder prediction 17 71 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0631 Sed-Chr1:4540188 Sed05g2176 Sed-Chr5:34604681 4.40E-47 dispersed
Sed05g2176 Sed-Chr5:34604681 Sed12g0029 Sed-Chr12:202825 1.60E-12 dispersed
Sed03g1320 Sed-Chr3:8446999 Sed05g2176 Sed-Chr5:34604681 1.50E-08 transposed
Sed04g3794 Sed-Chr4:46485285 Sed05g2176 Sed-Chr5:34604681 2.80E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38591 PF13912 zf-C2H2_6 5.60E-11 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2176 - - - 0.0