Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2177 ATGGGTGCCGACAGTGATTCCAGCGAGCATAGGGTTGAGGCCGGTGGCGGTGGCGATGGTGTTTCTGTTAATATTCGGTCTTCTAATGGCTCGAAATTTTCTGTGAGGACGAGTCTTGATTCCACGGTTGGGACGTTTAAATCCGTTCTTGCTCAAAATTGTGATATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGCCGCATCTTGAAGGACGATCAGACCTTAGCTAGTTATGGTTTACAGGCAGATCACACTATTCACTTGGTTCGTGGGTTTGCCCAAGCTTCATCAACACCTTCTGCTCCTGCTTCAAATGTTAATAGCACAACTTCTGAAACTGCTCCTGGCGTTACTAGAGGTGTTGGTTCCACTGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCTTTATTTCCTGGACTGGGTTTCAATCCTCTTGGTGGGGGTGGAACTGGACTTCCTGAGTTTGAACAAGTGCAACAACAGTTGACTCAGAATCCAAACATGATGAGGGATATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGGACCTTAATTACGAGCAATCCTCAAATGAGGGATATTATTGACAGGAATCCAGAGCTTGCTCATATACTCAATGACCCTAGTATCCTTAGGCGGACATTAGAGACTGCAAGGAATCCAGAACTCATGAGAGAGATGATGAGAAACACCGACAGAGCAATGAGTAACATCGAAGCTTCTCCTGAGGGATTTAACATGCTGAGACGAATGTATGAAAATGTTCAGGAGCCATTACTGAATGCAACAACGATGGCTGGAAGTGCTGGGAATGATTTGAGTTCAAACCCATTTGCCGCTCTTCTGGCAAACCAAGGGGGTGTACTAGCAAGGAACGACTCTAATAATTCTTCTACTACAGGATCTGAAACGACAGGAAATGCTGCTCCAAATACAAATCCACTTCCTAATCCCTGGGGAGGAACTCAGACCACAACTGCACGACCTACTCCAGCAGGTGAAGTAAGGCCTCCGGGTATTGGGGGTTTTGCTGGCGCCATGCCAGATGTATCCCAGATGAATCAGTTTCTGCAAAATCCAGCTATTTCACAAATGATGCAGAGCCTCCTCTCCAATCCTCAGTATATGAATCAAATCCTCAGTCTCAATCCACAGCTACGTGGCATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCGGAGTTTGTTCGCCAATTAACTAATCCTGAGATGATGCAGCAAATGCTATCAGTTCAGCAGTCACTCCTCTCTACCTTAAATCGACAGCCATCATCTCAAGATTCTGCTCAATCAGGTGCTGCTACAGGTGTTCCTAACCCTGCTGGATTGGATATGTTGATGAACCTGTTCGGTGGACTTGGCGCTGGCGGGTTGGCTGCCGCAAACAATCCCAACGTGCCTCCAGAAGAACTATATGCCACTCAACTTTCACAGCTCCAAGAGATGGGTTTCTTCGACACCCAAGAGAACATCCGAGCTCTACGTGCTACTTCTGGGAACGTCCATGCTGCTGTCGAGCGACTGCTGGGAAATCTCGGGTAG 1602 46.75 MGADSDSSEHRVEAGGGGDGVSVNIRSSNGSKFSVRTSLDSTVGTFKSVLAQNCDIPADQQRLIYKGRILKDDQTLASYGLQADHTIHLVRGFAQASSTPSAPASNVNSTTSETAPGVTRGVGSTESGAFGNAGLGASLFPGLGFNPLGGGGTGLPEFEQVQQQLTQNPNMMRDIMNMPAIQNLMNNPDLMRTLITSNPQMRDIIDRNPELAHILNDPSILRRTLETARNPELMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPLLNATTMAGSAGNDLSSNPFAALLANQGGVLARNDSNNSSTTGSETTGNAAPNTNPLPNPWGGTQTTTARPTPAGEVRPPGIGGFAGAMPDVSQMNQFLQNPAISQMMQSLLSNPQYMNQILSLNPQLRGMVDMNPQLREMMQNPEFVRQLTNPEMMQQMLSVQQSLLSTLNRQPSSQDSAQSGAATGVPNPAGLDMLMNLFGGLGAGGLAAANNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLG 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34608647 34614254 + Sed0010207.1 Sed05g2177 714803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2177 533 Gene3D - 474 533 - -
Sed05g2177 533 MobiDBLite consensus disorder prediction 438 455 - -
Sed05g2177 533 MobiDBLite consensus disorder prediction 300 340 - -
Sed05g2177 533 PANTHER UBIQUILIN 19 530 IPR015496 GO:0005829(PANTHER)|GO:0006511(PANTHER)|GO:0031593(PANTHER)
Sed05g2177 533 MobiDBLite consensus disorder prediction 97 125 - -
Sed05g2177 533 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515(InterPro)
Sed05g2177 533 PRINTS Ubiquitin signature 52 72 IPR019956 -
Sed05g2177 533 PRINTS Ubiquitin signature 73 94 IPR019956 -
Sed05g2177 533 FunFam Ubiquitin domain-containing protein DSK2b 475 533 - -
Sed05g2177 533 MobiDBLite consensus disorder prediction 97 121 - -
Sed05g2177 533 FunFam Ubiquitin domain-containing protein DSK2b 195 251 - -
Sed05g2177 533 SMART uba_6 492 530 IPR015940 -
Sed05g2177 533 MobiDBLite consensus disorder prediction 1 25 - -
Sed05g2177 533 SUPERFAMILY Ubiquitin-like 14 107 IPR029071 -
Sed05g2177 533 MobiDBLite consensus disorder prediction 300 343 - -
Sed05g2177 533 SMART CBM 357 389 IPR006636 -
Sed05g2177 533 SMART CBM 198 237 IPR006636 -
Sed05g2177 533 SMART CBM 146 185 IPR006636 -
Sed05g2177 533 SMART CBM 393 428 IPR006636 -
Sed05g2177 533 CDD Ubl_Dsk2p_like 21 93 - -
Sed05g2177 533 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Sed05g2177 533 SMART ubq_7 21 92 IPR000626 GO:0005515(InterPro)
Sed05g2177 533 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 487 531 IPR015940 -
Sed05g2177 533 Pfam UBA/TS-N domain 492 528 IPR015940 -
Sed05g2177 533 Pfam Ubiquitin family 23 91 IPR000626 GO:0005515(InterPro)
Sed05g2177 533 Gene3D - 194 251 - -
Sed05g2177 533 SUPERFAMILY UBA-like 488 530 IPR009060 GO:0005515(InterPro)
Sed05g2177 533 Gene3D - 18 105 - -
Sed05g2177 533 CDD UBA_PLICs 492 530 - -
Sed05g2177 533 MobiDBLite consensus disorder prediction 438 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2177 K04523 - - csv:101210644 843.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1015 Sed-Chr4:13479086 Sed05g2177 Sed-Chr5:34608647 9.00E-148 dispersed
Sed05g2177 Sed-Chr5:34608647 Sed13g2177 Sed-Chr13:26357481 3.00E-07 dispersed
Sed04g3795 Sed-Chr4:46488509 Sed05g2177 Sed-Chr5:34608647 1.20E-229 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39