Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2188 ATGGATTCCTTTGCTGCAAACTCAAAGAAATCATTCCACATTCGCTCAAATAGTTTTCCATCAAAGCCACATCCCATTGTGGATGAAGTTGATGAACATCTCTGCAGATTGAAGTCCTCTGAAGCAACTTCTTCTTTGTCCCAAAAACTTGATGGTCTTCAAGATTTACATGATTCCATTGATAAGTTGCTTCTTTTGCCACACACCCAGCAAGCTCTTGTTGACAACCAATCGGTTGATGACTTTCTCGCACAATCTCTCGAGCTCTTGGATGTGTGTGCTTTGGCTAAGGATGTTTTGTCACAGATGAAAGAATGTGCACACGAACTCGAGTCGGCTTTACTCAGGAGAAGAGGAGATGACATTGTAGTTGATGCTCACAAGTATATGAACTCAAGAAAAATGATGAAGAAGGAAATTTACAAGGCCTTGAAGGGAATGGAAAGAACAAGTTCCCAAAAAAGTGATGAAAGTTCAGAAATTGTTAGTTTATTAAAGGAGGCTGAAGCAGTTACATATAACAGCATTGAATCCTTGTTTTCCTTTCTAGCAGGGCCAAAGTGTTCATCAAAGATGAGCAAATGGCCTTTGGTTTCTAAGCTTATGAAACCTAAGAGAGTCGCCAACAAGGAAGATGAGATAAATGGAAATGAAGTAGAGATGGTGGATGCTGCATTATGTTCAATCACCGGTCAAAAATCTGATTTCCTTGTTCGAGTTGAAGTTGTGTGGAGCCCGCTGAGGAAGTTGGAGTCGTGTGCTCATGATCTTGAACAAGATCTCGAGAGTTTATATCGACACCTTATAAAAAATAGAGTCTCCCTTCTTAAGATCCTTAATCACTGA 846 40.07 MDSFAANSKKSFHIRSNSFPSKPHPIVDEVDEHLCRLKSSEATSSLSQKLDGLQDLHDSIDKLLLLPHTQQALVDNQSVDDFLAQSLELLDVCALAKDVLSQMKECAHELESALLRRRGDDIVVDAHKYMNSRKMMKKEIYKALKGMERTSSQKSDESSEIVSLLKEAEAVTYNSIESLFSFLAGPKCSSKMSKWPLVSKLMKPKRVANKEDEINGNEVEMVDAALCSITGQKSDFLVRVEVVWSPLRKLESCAHDLEQDLESLYRHLIKNRVSLLKILNH 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34701350 34702195 + Sed0027956.1 Sed05g2188 714814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2188 281 Pfam Protein BPS1 49 278 IPR004320 GO:0048364(InterPro)|GO:0048367(InterPro)
Sed05g2188 281 Coils Coil 247 267 - -
Sed05g2188 281 PANTHER OS06G0725500 PROTEIN 11 279 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2188 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2186 Sed-Chr5:34694473 Sed05g2188 Sed-Chr5:34701350 3.00E-131 dispersed
Sed05g2188 Sed-Chr5:34701350 Sed05g2190 Sed-Chr5:34706582 4.80E-44 dispersed
Sed05g2187 Sed-Chr5:34697895 Sed05g2188 Sed-Chr5:34701350 3.20E-125 tandem
Sed05g2188 Sed-Chr5:34701350 Sed05g2189 Sed-Chr5:34704090 4.50E-111 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g244 . Blo15g00399 . . . . . Bma12g00903 Cmo19g00799 . . . . . Sed05g2188 . . Bhi05g01617 Tan02g0599 Cmetu01g2685 . . . . Cla02g00372 . . Cco02g0382 Clacu02g0371 Cmu02g0368 Cre02g0701 . . . Cone10ag1225 . Csa07g00160 . Cme01g01176 . . . . . . . . . . . Cma11g01348 . . . . . . . . . . . . . . . . . . . Lsi11g01261 . Chy01g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217