Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2193 ATGGCTTTGTATTATTCTTACATATTTCTTTTCTTCTTTGCCTCATCTGCATTTGCTTGTGATCGTTGTCTTCACCAATCCAAAGCTGCCTTTTTCTCAAATGACTTACCACTTTCATCTGGGGCTTGTGGCTATGGTTCCTTGGCACTCGGCTTCCTTGGCGGGCACCTCGCCGCTGGCATCCCTTCCCTTTATAAAGAAGGCCTTCGTTGTGGCGCATGCTATCAGATAAGGTGCAAGGACAAGAAAGTTTGCAGCACAAGTGGGACCAAAGTGATTTTGACTGACCTGACCTCACACACCAATAATAAAACTGACTTTATTTTGAGCAAAAATGCTTTTTCTGCCATGGCTCGCAAGGGCCAAGACCACAATATTTTGAGACGTGGGACTGTCGATGTTGAATACAAGAGGATTCCTTGTGAATACAAAAAATTACAAAATGTGTCAGTGAGAATTGAAGAGTCAAGCCAAAAGCCACATCACATGGCTGTTAAGTTCTTATTTCAAGGTGGCCAAACAGATATTGTACTCGTTCACCTTCACCCGGTGGGTTCGGGAAGAGCGACGTTCATGAGCAGAAGGCATGGGACGGCAGTGTGGGAAACCGATACGGCGGGGGAAGCGGCAGTGGTGTTCCAGATGAGGGTGATTTCGGGGTTCGATGGGATGTGGGTGACGGCGGAGCTGGCGGTTCCAGCGGACTGGAAGCCCGGGATGATCTACGACCTCGGAGTTCAGATTGATGACATTGCCAAAGGACAAGAAAGTTGCAATCAATGTGATGAAGGAATTTGGTGA 801 47.32 MALYYSYIFLFFFASSAFACDRCLHQSKAAFFSNDLPLSSGACGYGSLALGFLGGHLAAGIPSLYKEGLRCGACYQIRCKDKKVCSTSGTKVILTDLTSHTNNKTDFILSKNAFSAMARKGQDHNILRRGTVDVEYKRIPCEYKKLQNVSVRIEESSQKPHHMAVKFLFQGGQTDIVLVHLHPVGSGRATFMSRRHGTAVWETDTAGEAAVVFQMRVISGFDGMWVTAELAVPADWKPGMIYDLGVQIDDIAKGQESCNQCDEGIW 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34756730 34760885 - Sed0018668.1 Sed05g2193 714819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2193 266 Gene3D - 143 248 IPR036749 -
Sed05g2193 266 PANTHER EXPANSIN-B3 10 250 - GO:0009505(PANTHER)|GO:0009506(PANTHER)
Sed05g2193 266 Pfam Expansin C-terminal domain 149 233 IPR007117 -
Sed05g2193 266 Gene3D - 14 142 IPR036908 -
Sed05g2193 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 146 IPR007112 -
Sed05g2193 266 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Sed05g2193 266 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576(InterPro)
Sed05g2193 266 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Sed05g2193 266 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576(InterPro)
Sed05g2193 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 244 IPR007117 -
Sed05g2193 266 SUPERFAMILY PHL pollen allergen 147 243 IPR036749 -
Sed05g2193 266 SUPERFAMILY Barwin-like endoglucanases 8 144 IPR036908 -
Sed05g2193 266 CDD DPBB_EXLA_N 20 143 - -
Sed05g2193 266 Pfam Lytic transglycolase 58 136 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0329 Sed-Chr5:2001388 Sed05g2193 Sed-Chr5:34756730 2.10E-23 dispersed
Sed05g0330 Sed-Chr5:2001388 Sed05g2193 Sed-Chr5:34756730 3.40E-26 dispersed
Sed05g2193 Sed-Chr5:34756730 Sed08g1152 Sed-Chr8:22666313 2.50E-58 dispersed
Sed05g2193 Sed-Chr5:34756730 Sed05g0328 Sed-Chr5:2001388 2.50E-34 transposed
Sed05g2193 Sed-Chr5:34756730 Sed01g4079 Sed-Chr1:69699887 2.50E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2193 - - - 0.0