Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2202 ATGGGTTATGAGGATAACGAAAGCTGTGGAAGTAGAGCCTACGACTCCGAGTCGGCGGCGGCGGCGGCGACGCCGCAGACTCGGCTACAGCGGCGGAAGTTCGAGGTCTACAATGAGGTTCTTCGCCGCCTGAAGGATTCCGACAACGACGAGGCCTTCCAGCCTGGTTTCGACGACGAACTCTGGCGTCACTTCAATCGCCTTCCTACTCGATATGCTCTCGATGTTAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCATGATCCTGCGAATCGACCTGCAATTGAAGTCCATCTAGTGCAGGTCCAAGCCATTTCTGATGGGAATTCAGCTGATTCATATCCTGTAAAAGACACTGACCATAATTCTGCAAATTTATCAAGCAGACGGGGCATACATCCACCACCTGCCTTTGGGTCATCTCCTAACCTTGAAGCCCTTGCCCTTGAAGCTAATAACACTCAGGATCAGGAGGTTGATCATTCTGTCCATGCCAGAACACAATTTTCCCGGCCGATGCATGAAATAACATTCTCTACAGATGACAAGCCAAAACTTCTCAGTCAGTTGACTTCCTTGCTTTCTGAGCTTGGGCTAAACATCCAGGAGGCACATGTATTTTCCACTGTTGACGGTTACTCCTTGGACGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACGGAGCGATTGAAGACTGCATTAGAAAAGGAAGTCTTGCAGAGGCAGACTTGGCGAAATCATAAATCCTGTTCTCCTGTAGTGGAACGGGATATATCCATTAAATCTGAACCTGATTGGGTAGAAATACCCACAGATGGAACTGATGTGTGGGAAATTAATCCTAAACATCTGAAGTTCGAGCATAAAGTTGCATCTGGATCATACGGAGATCTGTATAAAGGTACATACTGTAGTCAAGAAGTGGCTATTAAAGTCCTTAAATCTGAACGCGTAAATTCAGATATGCAACGTGAGTTCGCCCAAGAGGTATACATTATGAGAAAAGTCAGGCATAAGAATGTCGTACAGTTTATAGGGGCATGCACCAAGCTTCCAAGCTTGTGCATAGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACTAAAGGGAACTTTTAGGCTTCCATCCTTGCTAAAGGTAGCCATTGATGTCTCCAAGGGAATGAACTACTTGCACCAAAATAATATCATTCACAGAGATCTAAAGGCCCCCAATCTTTTGATGGATGAAAATGAAGTTGTCAAGGTTGCTGATTTTGGCGTTGCCAGAGTAAAATCTCAATCAGGAGTTATGACAGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGGTTATTGAACACAAACCCTATGATCACAAGGCTGATGTTTTCAGTTTCGGAATTGTCTTGTGGGAGCTGCTAACTGGAAAGCTACCGTATGAATTTCTAACACCATTACAAGCTGCAGTCGGAGTCGTACAAAAGGGTTTACGACCTACTATTCCAAAGCACACTAATCCCAAGCTAGCTGAGTTGCTGGAAAAATGTTGGCAGCAAGACCCGTCGTGCAGGCCTGACTTCTCTGAAATTATCGACATATTGTTGCAGATAACCAAGGAAGTTGCAGAAGATGGGGACGAAAGGCGAAAGGAGAAAAGTAGCGGAGGATTCCTTTCTGTGTTGAGACGTAACCATCACTAG 1725 44.93 MGYEDNESCGSRAYDSESAAAAATPQTRLQRRKFEVYNEVLRRLKDSDNDEAFQPGFDDELWRHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVHLVQVQAISDGNSADSYPVKDTDHNSANLSSRRGIHPPPAFGSSPNLEALALEANNTQDQEVDHSVHARTQFSRPMHEITFSTDDKPKLLSQLTSLLSELGLNIQEAHVFSTVDGYSLDVFVVDGWPYEETERLKTALEKEVLQRQTWRNHKSCSPVVERDISIKSEPDWVEIPTDGTDVWEINPKHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKSERVNSDMQREFAQEVYIMRKVRHKNVVQFIGACTKLPSLCIVTEFMSGGSVYDYLHKLKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAPNLLMDENEVVKVADFGVARVKSQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPSCRPDFSEIIDILLQITKEVAEDGDERRKEKSSGGFLSVLRRNHH 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34825792 34834774 + Sed0026524.1 Sed05g2202 714828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2202 574 Pfam ACT domain 183 229 IPR002912 -
Sed05g2202 574 SUPERFAMILY ACT-like 181 245 IPR045865 -
Sed05g2202 574 SUPERFAMILY Protein kinase-like (PK-like) 273 542 IPR011009 -
Sed05g2202 574 MobiDBLite consensus disorder prediction 1 26 - -
Sed05g2202 574 Pfam Protein tyrosine and serine/threonine kinase 293 541 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
Sed05g2202 574 ProSiteProfiles Protein kinase domain profile. 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 Gene3D Phosphorylase Kinase; domain 1 280 371 - -
Sed05g2202 574 CDD STKc_MAP3K-like 299 542 - -
Sed05g2202 574 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 PRINTS Tyrosine kinase catalytic domain signature 469 491 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 PRINTS Tyrosine kinase catalytic domain signature 450 460 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 PRINTS Tyrosine kinase catalytic domain signature 513 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2202 574 FunFam serine/threonine-protein kinase HT1 372 563 - -
Sed05g2202 574 Gene3D Transferase(Phosphotransferase) domain 1 372 566 - -
Sed05g2202 574 PANTHER SERINE-THREONINE PROTEIN KINASE 131 544 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed05g2202 574 ProSiteProfiles ACT domain profile. 183 261 IPR002912 -
Sed05g2202 574 SMART serkin_6 293 543 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0996 Sed-Chr4:11439070 Sed05g2202 Sed-Chr5:34825792 2.90E-218 dispersed
Sed05g2202 Sed-Chr5:34825792 Sed08g2502 Sed-Chr8:37827648 4.10E-66 dispersed
Sed05g3789 Sed-Chr5:45603251 Sed05g2202 Sed-Chr5:34825792 1.30E-43 dispersed
Sed05g3790 Sed-Chr5:45604337 Sed05g2202 Sed-Chr5:34825792 1.30E-43 dispersed
Sed12g0977 Sed-Chr12:6108739 Sed05g2202 Sed-Chr5:34825792 1.90E-19 dispersed
Sed04g3824 Sed-Chr4:46695465 Sed05g2202 Sed-Chr5:34825792 6.50E-298 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79206 PF07714 PK_Tyr_Ser-Thr 5.20E-74 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2202 - - - 0.0