Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2203 ATGGATTCGTTTAAGAATTCGTTCAAAAACACTGCATCGTTCAAGCATACCAAGAAGATTTCTGCGGGCGGAGCCGGGAGCGAAATCAATCACGAAGAGCTCCCCATTCTTCTCGATCCTGAACATACGGATCACCGCAATCGGCAAAGGAATCCTCGAGTGGTGAACGATTGCGGTTCACCTGACCGCACAGAGGTCATTCTCAAGATCGATGATGGCGAGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAACAATAATGATGGGATTGGAACTGGAACTGGAGAAACTTCGATTAGGGCTAGTGGTGGTGATAGGAATGGGGGATTTCAATTTGTGCAGGATGATCCGCCGATGAGGATGATTGGTGACTTTCTAAACAAGCAGAAAATTAGAGGCGAAACGACTTTGGATATGGATCTTGATATGGACGAGTTGCGGGTGGAAAAGGCTGTAACTCCTCCTATTCAATCTCCCTTGCATCGGATTTCGAAGGATCTTAAGGTTTCCTTTAAACATAGTTCGCCTGAAATTTCCGAATCGGTTCGGAGACGGTATAGGGATTCGAGCGATTTGGAAGAAGATAGCAGCAGATTTGGAGAACAATCATATGTGGAGAATGATTCTGCTGCTGAGGTTATTAGGTGCGCATCTAACTTGTCTTTTAATAGGGAGCTTTCGTTTCAGAAGCAATCTTATTTGCTTAGGGCGAAAACCAAGTCGAGATTGACAGACCCGCCCGATGAGCCAGACAAACCGATGCTCTCCGGTCTCGTTTCGAAATCGGAGCTCCGGTCTGGTTATATCAACAGGAATGACGACGACGAAGACGACCCCTTTCTGGAGGAGGATCTTCCTGACGAATTTAAAAGGGGAAATTTCAACGCTCTAACTCTGCTGCAATGGGTCAGTTTAATTTTAATCACTGCAGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGAGAATGAGCCTATGGGAATTGTATATATGGAAATGGGAGGTGATGATTTTGATATTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGAATCGTAGTGTTTTTCATTGAGAGGAATTTTCTCTTGCGTAAAAGGGTTCTGTATTTCGTATATGGGATCAGAAGGGCAGTGCAGAATTGTGCATGGTTAGGCCTTGTTCTAATCGCTTGGAATTTGTTGTTCAATAAGCGGGTTGCGAGCGAAACCAATATCAATATGCTCAATTATGTGAGGAAACTTTTACTCTGTCTCTTGATAAGCACATTGATTTGGCTAGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTGAGCACATACTTCGATCGAATTCAGGAATCGTTGTTTAACCAATATGTAATCGAGACGCTCTCAGGGGCACCGCTTATTGAACTTCGGAAGAATGAGGAAGAAGATGAGAGAGTTGCAGATGAAGTTCAAAAATTACAGAACGCAGGAATTACCGTACCCCCCGATCTCAGGGCAGCAGCCTTCTCTTCGGTAAAGAGTGGAAGGGCAATAGGCAGCGAGGGGATACAGAAAAGTTTTGGTAGAAGAGGTTCTAAGCTATCTCGAACACTTACGAAAAATGGAAATGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTATCTGCTTGGAATATGAAGAGGTTGTTGCACATAGTTCGACATGCTAGCATTTCTACACTGGATGAACAGATACAAGGGCCACGTCTTGATGATGAATCTACTAGAGAGATCAAAAGTGAACGTGAGGCAAAGATTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGGTATAAGTATATATACCTCGATGACTTAATGCGGTTCATGAGAGAAGACGAGGTTCTTAAAACAATGAGTCTCTTTGAAGGAGCAGCTGAAAGCCGGAGGATAAGCAAATCTGCCTTGAAAAATTGGGTGGTCAACGCCTTCAGAGAACGCCGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTTGATAAACTGCACCAAATGGTGAATGTCATATTTGCCATCCTTATATTAATTTTATGGCTTATAGTACTAGGAATTGCCTCCAGCAAATTTCTCCTCTTCGTTAGTTCTCAAGTAGTGGTTGTTGCATTCATTTTTGGAAACACTTGCAAGAACATATTTGAAGCAATCATCTTCTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGATGTGAAATCGATGGAATACAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTGTTCTTGAGAGCCGACAACCTGAAGATTATAGTCCCAAATAATGTTCTTGCAACCAAATTAATCTCCAACTTTTACCGTAGTCCCGACATGTGCGAGTCTATTGAATTCTTTGTCCATATAGTGACGCCAATCGAGAAACTTATGGCCATGAAACAGAGAATCCTAAGTTACATTGACAGCCACACAGAGCACTGGTATCCAGCCCCTATGATTGTGTTCATGGATATAAATAGCTTAAACAGTCTGAAATTTTTAATTTGGGTGTCACACACAATGAACCTCCAAGATGTAGAGGAAAGATTGAATCGGAAGTCGGCCTTGATCGAAGAGCTCATGAAGATCTGTCAAGAGCTCGACATTCAGTACCGTCTGTTTCCCATTGATATCAATATCCGTGCACTGCCTTCTTCTTCTGCACCCACCATTGGCTTTCCACCTAATTGA 2742 42.85 MDSFKNSFKNTASFKHTKKISAGGAGSEINHEELPILLDPEHTDHRNRQRNPRVVNDCGSPDRTEVILKIDDGEKVWRESRYDFWNNNDGIGTGTGETSIRASGGDRNGGFQFVQDDPPMRMIGDFLNKQKIRGETTLDMDLDMDELRVEKAVTPPIQSPLHRISKDLKVSFKHSSPEISESVRRRYRDSSDLEEDSSRFGEQSYVENDSAAEVIRCASNLSFNRELSFQKQSYLLRAKTKSRLTDPPDEPDKPMLSGLVSKSELRSGYINRNDDDEDDPFLEEDLPDEFKRGNFNALTLLQWVSLILITAALVCTLSIPYLRRMSLWELYIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGIRRAVQNCAWLGLVLIAWNLLFNKRVASETNINMLNYVRKLLLCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGAPLIELRKNEEEDERVADEVQKLQNAGITVPPDLRAAAFSSVKSGRAIGSEGIQKSFGRRGSKLSRTLTKNGNDGITIDHLHKLSPKNVSAWNMKRLLHIVRHASISTLDEQIQGPRLDDESTREIKSEREAKIAAKKIFQNVARRGYKYIYLDDLMRFMREDEVLKTMSLFEGAAESRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHQMVNVIFAILILILWLIVLGIASSKFLLFVSSQVVVVAFIFGNTCKNIFEAIIFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTVFLRADNLKIIVPNNVLATKLISNFYRSPDMCESIEFFVHIVTPIEKLMAMKQRILSYIDSHTEHWYPAPMIVFMDINSLNSLKFLIWVSHTMNLQDVEERLNRKSALIEELMKICQELDIQYRLFPIDINIRALPSSSAPTIGFPPN 913
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34836664 34840556 + Sed0009965.1 Sed05g2203 714829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2203 913 Coils Coil 472 492 - -
Sed05g2203 913 Gene3D - 741 790 IPR023408 -
Sed05g2203 913 SUPERFAMILY Sm-like ribonucleoproteins 730 790 IPR010920 -
Sed05g2203 913 Pfam Mechanosensitive ion channel, beta-domain 725 790 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g2203 913 MobiDBLite consensus disorder prediction 179 202 - -
Sed05g2203 913 MobiDBLite consensus disorder prediction 179 204 - -
Sed05g2203 913 FunFam Predicted mechanosensitive ion channel 741 790 - -
Sed05g2203 913 Coils Coil 860 880 - -
Sed05g2203 913 PIRSF Memb_At2g17000 24 911 IPR016688 -
Sed05g2203 913 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 51 903 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0647 Sed-Chr1:4727690 Sed05g2203 Sed-Chr5:34836664 1.50E-285 dispersed
Sed01g2461 Sed-Chr1:18343444 Sed05g2203 Sed-Chr5:34836664 4.90E-159 dispersed
Sed05g2203 Sed-Chr5:34836664 Sed05g3519 Sed-Chr5:43835163 4.50E-301 dispersed
Sed04g3825 Sed-Chr4:46705640 Sed05g2203 Sed-Chr5:34836664 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2203 K22048 - csv:101207426 1306.97