Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2217 ATGGACGACGGGGAGCTTGATTTTTCGAATCAAGAAGTGTTTTCGAGCCCCAATATGGAGCTTCCAAGCAGTTGCTCAATGGACAGTTTCCTTAACGATCTTCTCAAGGACACTCACACTTGTACACATACTCATACTTGCAATCCACCGGGCCCTGACTTCTCTCACACCCACACCTGTTTTCACGTCCACACTAAAATTGTCCCTGCCACTACTGAAGAAGACAAGACTGTTACTGACGACACGGCAGAATCGACCGAGAAGAATCCGAAGAAACGCCCATTGGGTAACCGGGAAGCTGTTCGAAAGTATCGCGAGAAGAAGAAGGCTAGGGCGGCATCAAACGAGGCTGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAGGGGCAGGCAGCACTGGAGGCTGAGATTGCTAGACTCAAGTGCTTGCTTGTGGATGTTAGGAGCAGAATTGAAGGGGAGATTGGTTCTTTCCCTTATCAGAAAACTGTTAATTCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCTTGTAATATGCAGTGTGAGAATCAGGTTTACTGCCTCCATCCCGGGGTCGATGGCAGAAGAAGCGGTGACGATACCGTGATTAATGGACAGAGCTTTGGTGCTTGTGAATTTGAAAATCTTCAATGTTCGGCAAATCACGACTCGGGATTGAATGAGATGCCTGGATGTGGGATAGGGAGTGCGGTTTCGAATGATATTACTTTAGGAGCGACAAAGAGGAAAGGTGAAAACTGA 795 47.3 MDDGELDFSNQEVFSSPNMELPSSCSMDSFLNDLLKDTHTCTHTHTCNPPGPDFSHTHTCFHVHTKIVPATTEEDKTVTDDTAESTEKNPKKRPLGNREAVRKYREKKKARAASNEAEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDVRSRIEGEIGSFPYQKTVNSNLSNPSIPGAYVMNPCNMQCENQVYCLHPGVDGRRSGDDTVINGQSFGACEFENLQCSANHDSGLNEMPGCGIGSAVSNDITLGATKRKGEN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34956719 34958792 - Sed0008134.1 Sed05g2217 714843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2217 264 MobiDBLite consensus disorder prediction 71 103 - -
Sed05g2217 264 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 181 IPR031106 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER)
Sed05g2217 264 SMART brlzneu 87 152 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2217 264 Pfam Basic region leucine zipper 86 142 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2217 264 MobiDBLite consensus disorder prediction 71 112 - -
Sed05g2217 264 Gene3D - 74 153 - -
Sed05g2217 264 CDD bZIP 91 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3853 Sed-Chr4:46897768 Sed05g2217 Sed-Chr5:34956719 2.20E-105 dispersed
Sed05g2217 Sed-Chr5:34956719 Sed05g3493 Sed-Chr5:43687714 9.00E-69 dispersed
Sed01g0191 Sed-Chr1:1506269 Sed05g2217 Sed-Chr5:34956719 3.10E-80 wgd
Sed04g3852 Sed-Chr4:46897768 Sed05g2217 Sed-Chr5:34956719 9.40E-106 wgd
Sed05g2217 Sed-Chr5:34956719 Sed05g3492 Sed-Chr5:43687714 3.40E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38592 PF07716 bZIP_2 1.00E-11 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2217 K25785 - csv:101208161 449.514