Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2217 | ATGGACGACGGGGAGCTTGATTTTTCGAATCAAGAAGTGTTTTCGAGCCCCAATATGGAGCTTCCAAGCAGTTGCTCAATGGACAGTTTCCTTAACGATCTTCTCAAGGACACTCACACTTGTACACATACTCATACTTGCAATCCACCGGGCCCTGACTTCTCTCACACCCACACCTGTTTTCACGTCCACACTAAAATTGTCCCTGCCACTACTGAAGAAGACAAGACTGTTACTGACGACACGGCAGAATCGACCGAGAAGAATCCGAAGAAACGCCCATTGGGTAACCGGGAAGCTGTTCGAAAGTATCGCGAGAAGAAGAAGGCTAGGGCGGCATCAAACGAGGCTGAGGTTGTTAGATTGAGGGCTTTGAATCAGCATTTGATGAAGAGGTTGCAGGGGCAGGCAGCACTGGAGGCTGAGATTGCTAGACTCAAGTGCTTGCTTGTGGATGTTAGGAGCAGAATTGAAGGGGAGATTGGTTCTTTCCCTTATCAGAAAACTGTTAATTCTAACTTGTCCAACCCAAGCATCCCTGGTGCTTATGTGATGAACCCTTGTAATATGCAGTGTGAGAATCAGGTTTACTGCCTCCATCCCGGGGTCGATGGCAGAAGAAGCGGTGACGATACCGTGATTAATGGACAGAGCTTTGGTGCTTGTGAATTTGAAAATCTTCAATGTTCGGCAAATCACGACTCGGGATTGAATGAGATGCCTGGATGTGGGATAGGGAGTGCGGTTTCGAATGATATTACTTTAGGAGCGACAAAGAGGAAAGGTGAAAACTGA | 795 | 47.3 | MDDGELDFSNQEVFSSPNMELPSSCSMDSFLNDLLKDTHTCTHTHTCNPPGPDFSHTHTCFHVHTKIVPATTEEDKTVTDDTAESTEKNPKKRPLGNREAVRKYREKKKARAASNEAEVVRLRALNQHLMKRLQGQAALEAEIARLKCLLVDVRSRIEGEIGSFPYQKTVNSNLSNPSIPGAYVMNPCNMQCENQVYCLHPGVDGRRSGDDTVINGQSFGACEFENLQCSANHDSGLNEMPGCGIGSAVSNDITLGATKRKGEN | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 34956719 | 34958792 | - | Sed0008134.1 | Sed05g2217 | 714843 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2217 | 264 | MobiDBLite | consensus disorder prediction | 71 | 103 | - | - | |
Sed05g2217 | 264 | PANTHER | CCAAT/ENHANCER BINDING PROTEIN | 1 | 181 | IPR031106 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0006357(PANTHER) | |
Sed05g2217 | 264 | SMART | brlzneu | 87 | 152 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g2217 | 264 | Pfam | Basic region leucine zipper | 86 | 142 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g2217 | 264 | MobiDBLite | consensus disorder prediction | 71 | 112 | - | - | |
Sed05g2217 | 264 | Gene3D | - | 74 | 153 | - | - | |
Sed05g2217 | 264 | CDD | bZIP | 91 | 144 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3853 | Sed-Chr4:46897768 | Sed05g2217 | Sed-Chr5:34956719 | 2.20E-105 | dispersed | |
Sed05g2217 | Sed-Chr5:34956719 | Sed05g3493 | Sed-Chr5:43687714 | 9.00E-69 | dispersed | |
Sed01g0191 | Sed-Chr1:1506269 | Sed05g2217 | Sed-Chr5:34956719 | 3.10E-80 | wgd | |
Sed04g3852 | Sed-Chr4:46897768 | Sed05g2217 | Sed-Chr5:34956719 | 9.40E-106 | wgd | |
Sed05g2217 | Sed-Chr5:34956719 | Sed05g3492 | Sed-Chr5:43687714 | 3.40E-68 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38592 | PF07716 | bZIP_2 | 1.00E-11 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2217 | K25785 | - | csv:101208161 | 449.514 |