Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2222 ATGGCGTTGCCGGTCGTAGACACCGAGTACCTCAACCAGGTCGACAAAGCTCGCCGTGACCTCCGCGCTCTCATTTCCAACCGGAACTGCGCTCCGATCATGCTTCGCTTAGCTTGGCACGACGCTGGCACTTACGATGTCAGTACAAAAACTGGTGGACCTAATGGATCGATTAGGAATGATGAGGAGTATTCTCATGGTTCTAATAATGGCCTGATAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATTCAAAGATTACTTATGCAGACTTGTACCAGCTAGCTGGTGTTGTAGCTGTTGAGGTCACTGGAGGCCCCACTGTTGACTTTGTTCCGGGTAGAAAGGATTCGAAAATTTCTCCCAAGGAGGGTCGGCTTCCTGATGCCAAAAAAGGTGCACCACATCTGCGGGACATCTTTTATAGGATGGGACTGTCTGACAAGGATATTGTTGCATTGTCTGGGGGTCACACATTGGGAAGAGCACATCCGGAGAGATCTGGGTTTGATGGACCTTGGACACAGGATCCTCTGAAGTTTGATAACTCATATTTTCTGGAACTGTTGAAGGGAGAATCAGAGGGATTATTAAAACTTCCTACTGATAAGGCTTTACTTGAAGATCCGGAGTTCCGCCAATATGTCGAATTGTATGCAAAAGATGAAGATGCATTCTTTAAAGATTATGCTGAGTCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGGCAAGGCAATTGTGAAGGACAGCACTGTATTGGCACAAGGCGCCGTCGGAGTTGCGGTTGCCGCTGCTGTGGTAATTCTGAGCTACTTATATGAAATTCGCAAGAAATTGAAGTAA 861 46.11 MALPVVDTEYLNQVDKARRDLRALISNRNCAPIMLRLAWHDAGTYDVSTKTGGPNGSIRNDEEYSHGSNNGLIKAIDFCEEVKSKHSKITYADLYQLAGVVAVEVTGGPTVDFVPGRKDSKISPKEGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQDPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPEFRQYVELYAKDEDAFFKDYAESHKKLSELGFTPGSGKAIVKDSTVLAQGAVGVAVAAAVVILSYLYEIRKKLK 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 34980340 34984724 + Sed0004709.1 Sed05g2222 714848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2222 286 PRINTS Haem peroxidase superfamily signature 31 45 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Haem peroxidase superfamily signature 107 119 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Haem peroxidase superfamily signature 152 167 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Haem peroxidase superfamily signature 176 191 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Haem peroxidase superfamily signature 89 106 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 12 244 IPR044831 GO:0000302(PANTHER)|GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0009507(PANTHER)|GO:0034599(PANTHER)|GO:0034599(InterPro)|GO:0042744(PANTHER)
Sed05g2222 286 SUPERFAMILY Heme-dependent peroxidases 14 248 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 Gene3D Peroxidase, domain 2 130 236 - -
Sed05g2222 286 ProSitePatterns Peroxidases proximal heme-ligand signature. 152 162 IPR019793 -
Sed05g2222 286 FunFam L-ascorbate peroxidase, cytosolic 130 236 - -
Sed05g2222 286 ProSiteProfiles Plant heme peroxidase family profile. 22 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 220 244 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 31 46 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 128 145 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 63 87 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 49 59 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 146 167 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 88 106 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 107 119 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 168 192 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 PRINTS Plant ascorbate peroxidase signature 10 30 IPR002207 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 Gene3D - 17 243 - -
Sed05g2222 286 Pfam Peroxidase 18 224 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g2222 286 CDD ascorbate_peroxidase 4 246 - -
Sed05g2222 286 ProSitePatterns Peroxidases active site signature. 31 42 IPR019794 GO:0004601(InterPro)
Sed05g2222 286 FunFam Cytosolic ascorbate peroxidase 17 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2222 K00434 - - csv:101206941 518.464
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0774 Sed-Chr3:4662414 Sed05g2222 Sed-Chr5:34980340 2.10E-66 dispersed
Sed03g0775 Sed-Chr3:4662414 Sed05g2222 Sed-Chr5:34980340 1.20E-43 dispersed
Sed05g2222 Sed-Chr5:34980340 Sed14g1205 Sed-Chr14:21299923 8.70E-102 dispersed
Sed04g3856 Sed-Chr4:46915812 Sed05g2222 Sed-Chr5:34980340 1.90E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g152 . . . . . . . . Cmo19g00742 . . . . . Sed05g2222 . Cpe15g00587 Bhi05g01726 Tan02g0695 Cmetu01g1029 . Hepe02g0430 . . . . . . . . . Cone12ag1229 Cone8ag1280 . . . Csa07g00093 . Cme01g01269 Blo04g00564 . . Bda14g00613 Bpe15g00817 . Bma03g00605 . . . . . . . Car19g00563 . . . . . . . . . . . . . . . . Lsi11g01196 . Chy01g00685 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002255 2 2 2 1 2 2 3 2 2 2 1 2 1 2 2 3 2 4 3 2 2 2 2 2 2 1 2 3 4 1 63