Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2245 ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTAGAAAATCCGGAGGGTCAGAAAGTGAAGGAAACTGCCAATGGCAGTGATGCCGAAACAAAGTATGGAGATAAACAGCGTAATCGAAGTTCAAAGTATAAGACGGATGGTAAAGATGATGGAGAACATAAGTCAAAGCGTTCAAAATCAGAAGATGAGTCACGGGATCATGATAGACATAGAGATAGGACTTCTTCTCAGCACCGGTCTAGGTCCAGAGATAGAGATCGTGGTCGACACCGGTCTAGGTCCAAAGACATAGATCGTGATCGGCATAGAAGCAGTAAGGAATCTAGGGGAAAAGGGGACAGAGAAAAGATTCATGAAGAGAGAAGAAGTAAGGACAGAGAAAGGATTCAAGAAGAGAGAAGAAGTAAGGACAGAGAAAGGATTCAGGAAGAGAGAAGAAGTAAGGACAGAGATGCCGATAGAGATAAAGAACGTGCTCATGATCGTGATAGACGAGGTAGAGATGGTGACAGGGATAGGGAAAGAGAACAGTCACGTCGAAGTATAAGTCATTCAGAAAGACACCGTAGTGATCGAGATGAAAGCATAAGAGAGAGGAGTCGAGATAATGAATTCAGAGAAAGGGAAAAGGGGACAGAGTCAAGAGAGCGAGGCAGAGATGGCAGAAAATACAAAGAAAAAAAAGAAGAAGCAGCAGAAGAAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTTTTTGCCTATCAGATATGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTCTTTTCCAGGGCCGGTAAGGTGCGAGATGTACGCCTCATCATGGATCGTAACTCAAGACGTTCTAAAGGAGTTGGATATGTTGAATTTGTAGATTCAATGTCTGTGCCCATGGCTATAGCACTTTCAGGCCAGCTCCTGCTTAGTTCACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAATCAGGTTCAGTCAACTTCCGCTGCTAGTGGAGCAATGGGCCCCTATTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGATAACCTTCGACAGGTTTTTGGAGCTTTCGGTACTGTGGAGTTGGTTCAGATGCCCGTTGATGAAATTGGGCAATGCAAGGGTTTTGGTTTTGTTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAGCAATAAAGGTGTCCACAATCACAGATCAGCCTGAACTGCAAGATGTTGGAGCAAGTACTGGAGACCTTGACGATGAAGATGGAGGTGGCTTGTCCTTAAATGCAAGTTCTCGAGCATCTCTGATGCAAAAGCTGGACCGCACTGGCACCGCATCTAGCATTGCTGGTTCTGTAGGTACACATGTTAATAACACAGGTGCTACTTTGCCAATGGCGCCGAGCCTTGGAGCCTCAACTATCCCGTCCCTTGCTACGTCTTTGGCCTCTGTTCCTGCTTTTCCTGGACTCGGTGCAGGCATTCAGGTTCCCATCGCTACTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTGTTGAAGAATATGTTTGATCCCACAGCTGAGTCGGAACCCAACTTTGACCTGGATATCAGAGACGACGTTGAGGAGGAATGCTCTAGGTTCGGAAAATTGGAACACATATTTGTCGACAAGAATAGCTCCGGTTTTGTATATCTGAGATTTGAAAGTTCACAGCCTGCAATGGAGGCGCAACGCGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATCTCGAGCTACGAAGCAAAATTTCCCGACAGCAGATAG 1875 45.17 MDFDEYDYLEKTVENPEGQKVKETANGSDAETKYGDKQRNRSSKYKTDGKDDGEHKSKRSKSEDESRDHDRHRDRTSSQHRSRSRDRDRGRHRSRSKDIDRDRHRSSKESRGKGDREKIHEERRSKDRERIQEERRSKDRERIQEERRSKDRDADRDKERAHDRDRRGRDGDRDREREQSRRSISHSERHRSDRDESIRERSRDNEFREREKGTESRERGRDGRKYKEKKEEAAEEEADPERDQRTVFAYQICLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDSMSVPMAIALSGQLLLSSPVMVKPSEAEKNQVQSTSAASGAMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPVDEIGQCKGFGFVQFTRLEDARNALSLNGQLEIAGRAIKVSTITDQPELQDVGASTGDLDDEDGGGLSLNASSRASLMQKLDRTGTASSIAGSVGTHVNNTGATLPMAPSLGASTIPSLATSLASVPAFPGLGAGIQVPIATANLLGVGTPSECLLLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLEHIFVDKNSSGFVYLRFESSQPAMEAQRALNGRWFAGKMIGATFMDISSYEAKFPDSR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35116793 35129581 - Sed0017736.1 Sed05g2245 714871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2245 624 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 436 548 IPR029123 -
Sed05g2245 624 CDD RRM3_RBM39_like 529 612 - -
Sed05g2245 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 422 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 Pfam RNA recognition motif 347 416 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 Pfam RNA recognition motif 554 605 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 Pfam RNA recognition motif 256 312 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 CDD RRM1_RBM39_like 246 318 - -
Sed05g2245 624 NCBIfam splicing factor, CC1-like family 124 622 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Sed05g2245 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 322 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 Gene3D - 330 427 IPR012677 -
Sed05g2245 624 Gene3D - 177 329 IPR012677 -
Sed05g2245 624 Gene3D - 526 624 IPR012677 -
Sed05g2245 624 SMART rrm1_1 346 418 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 SMART rrm1_1 531 609 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 SMART rrm1_1 246 318 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 530 613 IPR000504 GO:0003723(InterPro)
Sed05g2245 624 SUPERFAMILY RNA-binding domain, RBD 239 343 IPR035979 GO:0003676(InterPro)
Sed05g2245 624 FunFam CC1-like, splicing factor 340 448 - -
Sed05g2245 624 MobiDBLite consensus disorder prediction 1 84 - -
Sed05g2245 624 SUPERFAMILY RNA-binding domain, RBD 345 610 IPR035979 GO:0003676(InterPro)
Sed05g2245 624 MobiDBLite consensus disorder prediction 1 242 - -
Sed05g2245 624 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 623 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)|GO:1990446(PANTHER)
Sed05g2245 624 MobiDBLite consensus disorder prediction 91 242 - -
Sed05g2245 624 Coils Coil 128 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2245 K13091 - - csv:101209872 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2245 Sed-Chr5:35116793 Sed10g0470 Sed-Chr10:2996019 1.70E-126 dispersed
Sed04g3840 Sed-Chr4:46795106 Sed05g2245 Sed-Chr5:35116793 3.00E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65