Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2248 ATGTTCTCAGAGTTGATGAACTTCTTGAGGGCATGTTTTCGGCCGAGCTCCGATCGGAATGTGTCGGGGGATGTCAAGGGGCGGCAGGATGGGTTGCTGTGGTACAAAGACAGTGGACATCACTTGAATGGTGAATTCTCTATGTCTGTGGTTCAGGCAAACAATTTGCTTGAAGATCAGAGCCAGATTGAATCTGGCAGTTTGAGCTCGGATGAGTCTGGTCCCAGAGGGACATTTGTTGGAGTTTATGATGGCCATGGCGGCCCCGAGACGTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGATTTACTTCTGAGCAAAATTCAATGTCTGCGGAAGTAATACGCAAGGCATTTCAAGCAACAGAAGAGGGTTTTCTTTCTATAGTCCGAAGTCAATGGTCGACGAATGCACAAATTGCAGCTGTTGGTTCATGCTGTTTAGTTGGTGTAATCTGCAATGGGACTCTGTATGTTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAGTAGTGAGGTCAACTGGGGAGGTTCTAGCCATTCAGTTATCAACAGAGCACAATGTTTCTAATGAGTCCGTGAGGCAAGAGCTGCAAGCATTGCACCCTGAAGACTCACAAGTTGTGGTTTTAAAGCATAATGTTTGGCGAGTAAAGGGCATAATACAGATTTCCAGATCTATTGGCGACGTGTACTTGAAAAAACCGGAGTTCAATAGAGAACCTCTATATCCAAAGTTTCGAGTTCGGGAACCCTTCAAAAAGTCAATTTTGAGCTCTGAACCAGCCATTTCTGAGATCCAGTTGAAGCCGGATGATCAATTTATTATATTTGCATCTGATGGGTTGTGGGAGCAACTTAGCAATCAGGAAGCAGTTGATATAGTCCATAAACATTCTCAAAGTGGAAGTGCAAGAAGACTGGTGAAAGCTGCCCTTCAGATAGCCGCAAAGAAGAGAGAAATGAGGTACTCAGACTTGAAGAAGATTGAACGTGGTGTTCGTCGCCATTTCCATGACGACATCACCGTGGTGGTTGTGTTTCTCAATACAAATCTGCTCGTCCGAGCCAGCTCCACAAAGAGCTTGAGTGTCTCACTACGAGGGGGTGGAGTTAACCGGCTTCCCAACTCTTTAGCACCCGTCACTACGCCCATGTAG 1173 45.78 MFSELMNFLRACFRPSSDRNVSGDVKGRQDGLLWYKDSGHHLNGEFSMSVVQANNLLEDQSQIESGSLSSDESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQNSMSAEVIRKAFQATEEGFLSIVRSQWSTNAQIAAVGSCCLVGVICNGTLYVANLGDSRAVLGRVVRSTGEVLAIQLSTEHNVSNESVRQELQALHPEDSQVVVLKHNVWRVKGIIQISRSIGDVYLKKPEFNREPLYPKFRVREPFKKSILSSEPAISEIQLKPDDQFIIFASDGLWEQLSNQEAVDIVHKHSQSGSARRLVKAALQIAAKKREMRYSDLKKIERGVRRHFHDDITVVVVFLNTNLLVRASSTKSLSVSLRGGGVNRLPNSLAPVTTPM 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35186638 35192511 + Sed0001732.1 Sed05g2248 714874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2248 390 Gene3D - 34 362 IPR036457 -
Sed05g2248 390 SMART PP2C_4 37 351 IPR001932 -
Sed05g2248 390 FunFam Phosphatase 2C family protein 34 363 - -
Sed05g2248 390 SUPERFAMILY PP2C-like 49 354 IPR036457 -
Sed05g2248 390 CDD PP2Cc 46 353 IPR001932 -
Sed05g2248 390 PANTHER PROTEIN PHOSPHATASE 38 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed05g2248 390 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
Sed05g2248 390 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Sed05g2248 390 Pfam Protein phosphatase 2C 65 320 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0661 Sed-Chr1:4862227 Sed05g2248 Sed-Chr5:35186638 1.10E-174 dispersed
Sed05g2248 Sed-Chr5:35186638 Sed10g1033 Sed-Chr10:9117671 9.50E-160 dispersed
Sed04g3837 Sed-Chr4:46784349 Sed05g2248 Sed-Chr5:35186638 1.20E-202 wgd
Sed05g2248 Sed-Chr5:35186638 Sed05g3510 Sed-Chr5:43766552 5.00E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2248 - - - 0.0