Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2258 ATGAACCCTAAGTTTGCGCCCTCCCCTGAAAAATTTCCAAGCAAATCCCAAGTTAGTCTCAAGAAAAAGAACAACCATAATCTCTCTCTCTCTGTATGTATATGTATATATAAGCAATTAAGTTTTCTTTCGAATTTTTCAAACATGGGGCTACTTGGAAACAGCGTCAATGGCGGAAAAATGGCGGGAGCAGCAGCAGGTGGTGGCGGAGGAGGAACTGGGCTGGTGGCGATCGCCATTGACAGGGAAAAAGGAAGCCAAAATGCTCTGCGATGGGCGGCCGACAACTTGCTCGCAAAAGGGCAAACGGTGATTTTAATCCACGTGGTTCAGAGATCGTCCAGTGCGGCTTCTTCTTTGATTGGAGGAGCTATTATTCGTAATCGCGACGGCACGTTCGCGGCGGATTCGCCTCAGAAAAAGAAGCTTGAAATGCAGACTAGAGACGTTTTTCTCACATTTCGTTGCTATTGTTCTCGAAAGGATATTCAATGCCTTGATGTTATATTGGAAGACACTGATGTGGGGAAAGCATTAACAGAATACGTCACGAATGCTGCGATTGGAAATTTGGTGGTCGGGGCTCCTTCGAAACATGGTTTTATGAGCAGGTTTAAGACGTCAAGCCTGGGGAGTAGTGTGTCGAAAGGGGCACCAGATTTCTGCAATGTATATGTTATCTCGAAGGGAAAGGTGTCGTCGGTGAGAAATGCCACTCGTTCAGCTCCCTCTTCTTCCCCTCTACTTGATCATATGCAGAAGTTATCTAAGCCGATCGAAAAGGAATTGATCACTCCACATAAGATTAGTTTAAGAGATAGGACATCATCATTCAAGCCTCGTAGTTATCAAGAGGAATCATTTAAGTCACCTTTCTCTCTTGGAGGGGATAGGACTTCTATTTCCAAATGTAGTGGAGGTTTCTCCGATTCAGAATCCGACATATCCTTCATAAGCTCTTGCAGACCAAGCACGGAGCGTGCTTCTTCTGTTGCATTTGACTTTGCTGATTCTGCCTCACAATTTTCGACCAGCTCAGACAAAAGCTTTGCATCTATACCATTTAGACCTAAATTATCAGACCTTAGTTTTCTCAATGATTTCTCATCGGTTTCAGATGAGAGCTGCAGGACATCGTGTTCCTGGTCTTCGAACATGGATGATGCAGAACTTGAAATGAGGAGGCTGAAGCTAGAGCTTAAACAAACAATGGAGATGTACAGTACAGCATGTAAAGAAGCACTAACAGCAAAGCAGAAGGCAACGGAATTACATAATTGGAAACGTGAAGAAGAACAGAGATTAGAAGAGGCACGACTCGCACAAGAAGCAGCAGTGGCTGTTGCAGAGCAGGAAAGAGCAAGATGCCAAGCAGCAATTGAAGCAGCTGATGCAGCTAAGAGAATTGCAGAGTTAGAATCAGATAAGAGAGCACATCTAGAGATGAAAACAATTAGAGAAGCAGAGGAAATGCAGAGAGCATTGAAGAATCTTGCACAAAGTGACATCAGATACAGGAGATATACAATTGAGGAAATTGAATCAGCAACAGAACGTTTTTCACCCTCTCGAAAGGTTGGGGAAGGAGGTTATGGACCTGTTTATCGTTGTCGTCTTGATCACACATCGGTTGCAGTCAAGGTGTTGCGTCCTGATGCGACTCAAGGAAGGACACAGTTTCAGCAAGAGGTTGATATATTGAGTTGCATAAGGCATCCCAACATGGTGCTTCTCCTAGGAGCATGTCCGGAATATGGCATTCTAGTGTACGACTACATGTCCAGAGGTAGTTTGGAGGATCGGCTCTTCCGAAAGGGGAACACCCCTGTTATTCCCTGGCAATATAGGTTTCGAATTGCTGCCGAGATTGCTACTGGCCTTCTGTTTCTCCATCAAACAAAGCCAGAGCCATTGGTGCACCGTGATCTCAAGCCAGCAAACATATTGCTAGACCACAACTATGTTAGCAAGATAAGCGACGTCGGTTTGGCTAGACTTCTACCTGCAGTGGCCGAAAATGTAACTCAGTGCTGCATGACTTCGGCCGCCGGAACTTTCTGCTATATAGACCCCGAGTATCAACAATCGGGAATGCTTGGGGTTAAATCTGATGTGTATTCACTAGGTATCATATTACTTCAACTACTGACAGCTAAGCCGCCCATGGGGTTGGCTCACCAGGTTGACAAATCTATCGAGAAGGGGACTTTTGGGGAATTTCTGGACCCAGCTGTGCCTGATTGGCCAGTTGAACAGGCACTTTGCATTGCAAAATTAGCACTTCAATGTGCGGAACTTAGACGAAAAGACAGACCAGATCTTGACAGTGTTGTGTTGCCAGAACTTAACAAATTTAGAGATTTTGGTGAGGAGAAAATGCAGGACATGGTGTCTGTGGATGGTAGTGGACCTTTGAGCGGGTTTAGCGGTTTTAGCCAAGAATCAATGGAGGAGGTTAGTATGTAA 2466 44.97 MNPKFAPSPEKFPSKSQVSLKKKNNHNLSLSVCICIYKQLSFLSNFSNMGLLGNSVNGGKMAGAAAGGGGGGTGLVAIAIDREKGSQNALRWAADNLLAKGQTVILIHVVQRSSSAASSLIGGAIIRNRDGTFAADSPQKKKLEMQTRDVFLTFRCYCSRKDIQCLDVILEDTDVGKALTEYVTNAAIGNLVVGAPSKHGFMSRFKTSSLGSSVSKGAPDFCNVYVISKGKVSSVRNATRSAPSSSPLLDHMQKLSKPIEKELITPHKISLRDRTSSFKPRSYQEESFKSPFSLGGDRTSISKCSGGFSDSESDISFISSCRPSTERASSVAFDFADSASQFSTSSDKSFASIPFRPKLSDLSFLNDFSSVSDESCRTSCSWSSNMDDAELEMRRLKLELKQTMEMYSTACKEALTAKQKATELHNWKREEEQRLEEARLAQEAAVAVAEQERARCQAAIEAADAAKRIAELESDKRAHLEMKTIREAEEMQRALKNLAQSDIRYRRYTIEEIESATERFSPSRKVGEGGYGPVYRCRLDHTSVAVKVLRPDATQGRTQFQQEVDILSCIRHPNMVLLLGACPEYGILVYDYMSRGSLEDRLFRKGNTPVIPWQYRFRIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDHNYVSKISDVGLARLLPAVAENVTQCCMTSAAGTFCYIDPEYQQSGMLGVKSDVYSLGIILLQLLTAKPPMGLAHQVDKSIEKGTFGEFLDPAVPDWPVEQALCIAKLALQCAELRRKDRPDLDSVVLPELNKFRDFGEEKMQDMVSVDGSGPLSGFSGFSQESMEEVSM 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35245229 35249658 + Sed0011203.2 Sed05g2258 714884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2258 821 PANTHER OS02G0152300 PROTEIN 76 798 IPR051348 -
Sed05g2258 821 Gene3D Phosphorylase Kinase; domain 1 487 592 - -
Sed05g2258 821 Pfam Protein kinase domain 522 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2258 821 ProSiteProfiles Protein kinase domain profile. 520 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2258 821 Coils Coil 386 406 - -
Sed05g2258 821 Coils Coil 432 466 - -
Sed05g2258 821 SUPERFAMILY Protein kinase-like (PK-like) 502 778 IPR011009 -
Sed05g2258 821 Pfam Universal stress protein family 77 215 IPR006016 -
Sed05g2258 821 Gene3D Transferase(Phosphotransferase) domain 1 593 800 - -
Sed05g2258 821 MobiDBLite consensus disorder prediction 805 821 - -
Sed05g2258 821 CDD STK_N 75 230 - -
Sed05g2258 821 SMART serkin_6 520 782 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2258 821 MobiDBLite consensus disorder prediction 799 821 - -
Sed05g2258 821 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 492 592 - -
Sed05g2258 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 77 226 - -
Sed05g2258 821 Gene3D HUPs 75 227 IPR014729 -
Sed05g2258 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3884 Sed-Chr4:47048391 Sed05g2258 Sed-Chr5:35245229 4.20E-247 dispersed
Sed05g2258 Sed-Chr5:35245229 Sed13g2108 Sed-Chr13:25785078 4.50E-228 dispersed
Sed05g2257 Sed-Chr5:35245229 Sed05g2258 Sed-Chr5:35245229 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79208 PF00069 Pkinase 1.20E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2258 - - - 0.0