Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2271 ATGGGTTTCCGTTTGCCTAGGATCCTTCATGCTAAGCAAAGTCTTCGACGATCTACATCAACAGGAAATGGATTATCTCCAAAAGCTGTAGACATTCCAAAAGGCTACTTCACAGTTTATATTGGTGAGGAACAAAAGAAACGTTTTGTCATCCCACTATCTTTCTTGAATCAGCCTTCATTTCAAGATTTGTTGAGCCAAGCAGAAGAAGAGTTCGGATATGATCATCCAATGGGTGGCATCACAATTCCCTGCAGTGAAGAAGTGTTTTTCAATCTTGCTCAGAGTTTAAATAACTCGTGA 303 39.93 MGFRLPRILHAKQSLRRSTSTGNGLSPKAVDIPKGYFTVYIGEEQKKRFVIPLSFLNQPSFQDLLSQAEEEFGYDHPMGGITIPCSEEVFFNLAQSLNNS 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35301253 35301937 + Sed0025382.1 Sed05g2271 714897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2271 100 Pfam Auxin responsive protein 16 96 IPR003676 GO:0009733(InterPro)
Sed05g2271 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 96 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2271 K14488 - - csv:116405158 177.563
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3888 Sed-Chr4:47073340 Sed05g2271 Sed-Chr5:35301253 1.30E-41 dispersed
Sed05g2266 Sed-Chr5:35275053 Sed05g2271 Sed-Chr5:35301253 2.70E-50 dispersed
Sed05g2269 Sed-Chr5:35294494 Sed05g2271 Sed-Chr5:35301253 2.20E-44 dispersed
Sed05g2271 Sed-Chr5:35301253 Sed05g3576 Sed-Chr5:44286643 3.30E-24 dispersed
Sed05g2270 Sed-Chr5:35296992 Sed05g2271 Sed-Chr5:35301253 1.30E-41 tandem
Sed05g2271 Sed-Chr5:35301253 Sed05g2272 Sed-Chr5:35302516 6.70E-25 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g71 . . . . . . . . Cmo19g00722 . Cma02g00348 Cma20g00783 . . Sed05g2271 . . Bhi05g01765 Tan02g0733 Cmetu01g2428 . . . . . . . . . . . Cone12ag1204 Cone8ag1250 . . Lsi10g00442 . Chy11g00317 . . . . . . . Bma03g00582 . Sed01g0244 Cmo02g00346 . . . . . . . Bhi10g01917 Tan05g1217 Cmetu11g1982 . . . . . . . . . . . . Csa02g01327 . Cme11g00435
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213