Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2272 ATGGGATTCCGATTGATAAACAGCCCACGAAAATCTTCATCGACTGTTCCAAAGGGGTTCTTCGCCGTGTACGTTGGAGAGACCCAAAAGCGACGACACGTGATTCCGATTTCGTACTTGAAGCATCCGTCGTTTCAAGATCTGCTGAGTAAAGCTGAAGAAGAATTCGGATTCGATCATCCCATGGGGGGTTTGACGATCCCTTGCAACGAAGATGTGTTCTTCGAAGTTACTTCTCGATTGGCGAATTGTTGA 255 46.67 MGFRLINSPRKSSSTVPKGFFAVYVGETQKRRHVIPISYLKHPSFQDLLSKAEEEFGFDHPMGGLTIPCNEDVFFEVTSRLANC 84
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35302516 35305910 + Sed0014782.1 Sed05g2272 714898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2272 84 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 81 IPR003676 GO:0009733(InterPro)
Sed05g2272 84 Pfam Auxin responsive protein 10 80 IPR003676 GO:0009733(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2272 K14488 - - csv:105436052 174.096
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0247 Sed-Chr1:1899837 Sed05g2272 Sed-Chr5:35302516 3.70E-28 dispersed
Sed04g3889 Sed-Chr4:47076697 Sed05g2272 Sed-Chr5:35302516 4.00E-39 dispersed
Sed05g2272 Sed-Chr5:35302516 Sed05g3576 Sed-Chr5:44286643 1.10E-25 dispersed
Sed05g2271 Sed-Chr5:35301253 Sed05g2272 Sed-Chr5:35302516 6.70E-25 tandem
Sed05g2272 Sed-Chr5:35302516 Sed05g2273 Sed-Chr5:35320289 4.40E-16 tandem
Sed04g3891 Sed-Chr4:47093519 Sed05g2272 Sed-Chr5:35302516 2.30E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213