Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2279 ATGGATGGAACTGAAGATCATACTGATAGCATTCGAAATATTCAATGTTCATCTTCGGCTGTAAATCATCACTTATCGATGGATCAGCTAAAAATTTCTCAAGGCCGTACACAGCATTTTCAGCCAAACTTTGTCGGAGATAATAGTAGAAGAATTGGGATACCGCCTTGTCCCAACTCATCGCAGATCCCTCCAATCTCACCGTATTCTCAGATTCCTAAGTCGCGTCCGATGAACCAGCAAAGTTATAGCCCAGTTACTACTCATTCTCGATCGTTATCGCAGCCTTCATTTTTCTCTCTTGATTCTTTGCCCCCTTTAAGCCCGTCTCCATTTCGCGACTCCCCTTCTACAGCAAATTCAGATCAGGTTTCTGCAGATACAGCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCTTCACCTTATATGAGAACCAATTCATCTAAGATGGGAGATGCCTTACCCCCTCGTAAAGCCCATAGGCGGTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTTTTGGTGGCTCGGGTGGATTTGAGCGATCAACAAGTTGTAAAGAGAATGCGGGGATATTTAAGCCGGCCAACCAGTTTGTTAAAAGAGAACACAGTTTGGAGAAAAACATTGATAACAGTTTGGAAGGAATGGGTGAAAGGAAGTCCGAAGGGGATACTGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATCTGTTCAACTCCGCAGGGGCCACTGACAAGAATGATCCTGAGAATCGGGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAGGGGGTGACAGCAGCGATAATGAAACCGAAAGCAGTGTAAATGAAAGTGGGGATAACACTCAAATGGCTGGATTGAATTCCTCTGCTGAGAAGAAGGAAGGGAACAAACGGACTGCAGGTGGAGATATTGCTCCAACTACCAGACATTACCGGAGTCTTTCCATGGATAGTTTCATGGGAAATATGCAGTTTGGTGATGAGTCGCCCAAAATGCCTCCTACACCACCTGGTGTTCGCTCAGGGCAAATTTCTTCAAACAACATAGTTGATGGTAATTCAAATTCATTCAGCTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCACTAATTGATCCAAAGCGTGCAAAAAGGATCTTGGCCAACCGCCAATCTGCTGCTCGATCGAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCCACCACACTGTCTGCCCAACTCACACTTCTGCAGCGAGACTCAGTTGGGCTTACAAACCAAAATAACGAACTGAAGTTCCGTCTCCAAGCTATGGAGCAGCAAGCTCAACTACGGGATGCTCTAAATGAAGCCTTAACTGCGGAGGTTCAGCGACTGAAGCTCGCTACGACCGACATAAATGCACAATCTCATCCCTCTAATGGGATAATGGCTCAACCTTCTACGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAGCAGCACCACCACCAACAACAGCAGCATATGCACCAGAATGGCAATGCAACCAAAAAACCAGAATCCAACCAATAG 1668 44.78 MDGTEDHTDSIRNIQCSSSAVNHHLSMDQLKISQGRTQHFQPNFVGDNSRRIGIPPCPNSSQIPPISPYSQIPKSRPMNQQSYSPVTTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTANSDQVSADTAMEDRDASSHSLLPPSPYMRTNSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPFGGSGGFERSTSCKENAGIFKPANQFVKREHSLEKNIDNSLEGMGERKSEGDTVDDLFSAYMNLDNIDLFNSAGATDKNDPENREDLDSRGSGTKTGGDSSDNETESSVNESGDNTQMAGLNSSAEKKEGNKRTAGGDIAPTTRHYRSLSMDSFMGNMQFGDESPKMPPTPPGVRSGQISSNNIVDGNSNSFSLEFGNGEFSGAELKKIMANDKLAEIALIDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTDINAQSHPSNGIMAQPSTNHHGLQLQLQQQQHHHQQQQHMHQNGNATKKPESNQ 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35361619 35366068 - Sed0021879.1 Sed05g2279 714905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2279 555 SMART brlzneu 403 467 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2279 555 MobiDBLite consensus disorder prediction 276 307 - -
Sed05g2279 555 MobiDBLite consensus disorder prediction 502 555 - -
Sed05g2279 555 Gene3D - 406 458 - -
Sed05g2279 555 MobiDBLite consensus disorder prediction 170 192 - -
Sed05g2279 555 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 405 468 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2279 555 MobiDBLite consensus disorder prediction 261 275 - -
Sed05g2279 555 MobiDBLite consensus disorder prediction 64 104 - -
Sed05g2279 555 Coils Coil 423 478 - -
Sed05g2279 555 CDD bZIP_plant_RF2 408 457 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2279 555 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 145 544 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g2279 555 MobiDBLite consensus disorder prediction 39 192 - -
Sed05g2279 555 MobiDBLite consensus disorder prediction 254 358 - -
Sed05g2279 555 Pfam bZIP transcription factor 407 461 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2279 555 SUPERFAMILY Leucine zipper domain 407 458 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2279 555 FunFam probable transcription factor PosF21 406 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2279 Sed-Chr5:35361619 Sed05g2281 Sed-Chr5:35370118 1.00E-263 dispersed
Sed05g2279 Sed-Chr5:35361619 Sed05g2280 Sed-Chr5:35370118 1.00E-263 tandem
Sed04g3895 Sed-Chr4:47107430 Sed05g2279 Sed-Chr5:35361619 1.60E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38596 PF00170 bZIP_1 9.20E-09 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2279 - - - 0.0