Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2280 ATGGGGGATACTGAAGATCATACTGATAACATACGAAATCTTCAATGTTCATCATCTGCTGTAAATCATTATTTATCTATGGATCAACTGAAAATTTCTCAAGGCCGTACACAGCATTTTCAGCCGAACTTTGATACTAATAGAAGAATTGGGATACCACCTTGTCCTAATTCACCACAGATCCCTCCAATCTCCCCGTATTCACAGATCCCGAAGTCGCGTCCGATGAACCAGCAAAGTTATAATCCAGTTCCTACTCATTCTCGATCGTTGTCTCAGCCATCATTTTTCTCTCTTGATTGTTTGCCCCCTTTAAGCCCGTCTCCATTTCGTGAATCCCCTTCTACATCGAATTCGGATCAGGTCTCTGTAGATACAGCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCTTCACCTTATATGAGGGCCAATTCTTCTAAGATGAGAGATGCTTTACCTCCTCGTAAAGCTCATAGGCGGTCTAATAGTGACATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTTTTGGTGGCTCGGGTGGATTTGAGCGATCAACAAGCAGTAAAGAGAATGCGGGGATATTCAAGCCGGCCAACCAGTTTGTTAAAAGAGAACATAGTTTGCAGAAAAGAATTGATAGCAATTCGGAAGGAATGAGTGAAAGGAAGTCCGAAGGGGACACCGTGGATGATTTGTTCTCTGCTTATATGAATTTGGATAATATTGATTTCTTCAACTCCTCAGGGGTCAATGAAAAGAATGGTCCTGAGAATCGGGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAGGGGGTGACAGCAGTGATAATGAAACCGAAAGCAGTGTAAATGAAAGTGGGGATAACACACAAATGGCTGGATTGAATTCCTCTGCTGAGAAGAGGGAAGGGAGCAAACGGACTGCAAGTGGAGATATCGCTCCAACTAGCCGACATTACCGGAGTGTCTCCATGGATAGCTTCATGGGTAGTATGCAGTTCGGTGATGAGTCGCCCAAAATGCCTCCTACACCACCTGGTGTTCGTCCAGGGCAAATTTCTTCAAACAACCTAGTTGATGGCAATTCAAATTCATTCAGCTTGGAGTTCGGTAATGGCGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCTGAGATTGCATTAATGGATCCCAAGCGAGCAAAGAGGATCTTAGCAAACCGCCAATCTGCTGCTCGATCGAAAGAACGAAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACTGAAGCCACGACGCTGTCTGCCCAACTCACTCTCCTGCAGCGAGACTCAGTTGGCCTTACAAACCAAAATAATGAATTGAAGTTCCGTCTCCAAGCCATGGAGCAGCAATCACAACTACGCGATGCTCTAAATGAAGCCTTAACTGCGGAGGTTCAACGATTGAAGCTCGCTACGACCGACATAAACGCGCAATCCCATCCCTCTAATGGGGTAATGGCTCAACCTTCTATGAATCACCATGGACTCCAGCTTCAGCTTCAGCAGCAACACCAACAACAACAACAGCAACATATGCAGCAAAATGGCAATGCAACCAAAAAACCAGAGTCCAACCAATAA 1659 44.61 MGDTEDHTDNIRNLQCSSSAVNHYLSMDQLKISQGRTQHFQPNFDTNRRIGIPPCPNSPQIPPISPYSQIPKSRPMNQQSYNPVPTHSRSLSQPSFFSLDCLPPLSPSPFRESPSTSNSDQVSVDTAMEDRDASSHSLLPPSPYMRANSSKMRDALPPRKAHRRSNSDIPFGLSSMIQSSPFGGSGGFERSTSSKENAGIFKPANQFVKREHSLQKRIDSNSEGMSERKSEGDTVDDLFSAYMNLDNIDFFNSSGVNEKNGPENREDLDSRGSGTKTGGDSSDNETESSVNESGDNTQMAGLNSSAEKREGSKRTASGDIAPTSRHYRSVSMDSFMGSMQFGDESPKMPPTPPGVRPGQISSNNLVDGNSNSFSLEFGNGEFSGAELKKIMANDKLAEIALMDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQSQLRDALNEALTAEVQRLKLATTDINAQSHPSNGVMAQPSMNHHGLQLQLQQQHQQQQQQHMQQNGNATKKPESNQ 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35370118 35375642 - Sed0009067.1 Sed05g2280 714906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2280 552 Coils Coil 421 476 - -
Sed05g2280 552 CDD bZIP_plant_RF2 406 455 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2280 552 MobiDBLite consensus disorder prediction 209 233 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 55 69 - -
Sed05g2280 552 Gene3D - 404 456 - -
Sed05g2280 552 Pfam bZIP transcription factor 405 459 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2280 552 MobiDBLite consensus disorder prediction 107 233 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 40 92 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 340 367 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 252 326 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 274 305 - -
Sed05g2280 552 FunFam probable transcription factor PosF21 404 457 - -
Sed05g2280 552 MobiDBLite consensus disorder prediction 168 200 - -
Sed05g2280 552 SMART brlzneu 401 465 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2280 552 MobiDBLite consensus disorder prediction 70 92 - -
Sed05g2280 552 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 403 466 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g2280 552 MobiDBLite consensus disorder prediction 501 552 - -
Sed05g2280 552 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 146 540 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed05g2280 552 SUPERFAMILY Leucine zipper domain 405 456 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3895 Sed-Chr4:47107430 Sed05g2280 Sed-Chr5:35370118 2.60E-224 dispersed
Sed04g3896 Sed-Chr4:47107430 Sed05g2280 Sed-Chr5:35370118 1.10E-203 dispersed
Sed05g2280 Sed-Chr5:35370118 Sed10g2108 Sed-Chr10:37574587 3.10E-39 dispersed
Sed05g2279 Sed-Chr5:35361619 Sed05g2280 Sed-Chr5:35370118 1.00E-263 tandem
Sed05g2280 Sed-Chr5:35370118 Sed05g2281 Sed-Chr5:35370118 8.10E-298 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38597 PF00170 bZIP_1 1.30E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2280 - - - 0.0