Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2290 ATGGAAGCCGAAGAAAACGATTCTTCGAAGCACGAAGAACAAGCACCTCTTCTCCATGTCGACGACGACGCCCTTCGGAAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTTCAATTCCGCCATTGACGAAACGGAGTTTCGACCTATTACCGGCCTTGAATCTCTGCAGCATAGCGATGCAATTCTTGGGGACGAGAGTTTTGTTGCGGAGACTTGTCCACAGATGGAGAAGAAGGATGCGGCGGAGGTGGCAGAGTTGGCAGAGGAGAAGGAAAATAACGTTATTGAGGATTTGGCGGAAGATTCAGTGAAGTTGGAGGTTGAACCGGAGATTGGGTTATTGGGGCAAAGGGTTTTCGGTGATGAGGTTGCTGAATTTGGAGAAGGTGAGTTGTTACCTGGAATGGTTATGGGTTGTGTTGTTGAAAATCAAGTCGAGGGCAGTGTTTTGATGGCGGATTTTCCAGAAAATACAGTTGGTTGTACTGTGATAACTGAGGAGACATGCGTGACTGATGTCTTGGATGAGAGAACGCTTGGAGTAGCGAGTGTTTTTGTTACTGATGTGACCAACTCGAAGACCGAGGTAGAAGAGAATGCTGATGAACCTTACGACTCGCAGAATGTTGAGCTTCCAAAGGAAGAAAATGTTGCTATGGAGGATAGGGAATTGGGTGTATCTGTGCAGCTCGTGGAGGACTCCGAGGTGAAAGTAAATTTGGTAGATGGAGCTGTCGCAGATGGTCAAATGTTGAAGATGGAGAATGTGTCAAGCAACACAGATGAGGTGGGGTTGACAAGTTTGGATGGTGAGAGTGATTGGGCTGTAAATGTGGAGAATGCTAAAGACAAGACTGTTGAGATGGGTGAAATGTGTAAAGACGAGGCTACTGATGAGGCAATGATGGAGAATTTAGCTGATGGGACCTTAGAGATCAAGGGAGTTGACGTAACAGACAACGGTATTGACACGTTGAAGATTGAGAACACGGAAGATAAGGAAGCAGGGGTGCAAGGATTGAGTGTGGCTGATGAGAGTGCAGAGGTTGCCGATACGGATAATGTGGAAGACAAGACGACAGCACAATCGGAGGAAATGGACATGGAAGAAGAGGCCGAGGAGGCAGATGACATTGTCTATTTGGTACATGAAGAGACTGGATCAGAGGAGACTGATGCAAACATGACAGAAGCGGCAGAGGAGGTTGAGAAGATGGATGTTACAGAGGATGTTGATGAGCCAAGAAAAAGCAGCAGTGGAGGTAAAAGAAAGCGTGGAAAGAGTTCTAAAGCTCCAGCTAGAGTGCCTTCTAGGAAGAAAAAAGTAGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGCGAACTTGTACTCTGTGATCGCAGAGGCTGTCCCAAGGCATACCACCCTTCCTGTGTTAATCGTGACGTGGCATTCTTCCGAGCTAAGGGTCGATGGAATTGTGGTTGGCATCTTTGTAGTAACTGTGAGAAGACTGCACACTACATGTGTTACACATGTACATTTTCCTTGTGTAAGGGCTGTATAAAAAAATCTGTTTTTTCGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGCCATGCATGAAATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGGTCAAATTGATTTTAATGAGAAAAATAATTGGGAGTATCTTTTCAAGGAGTACTGGACTGAGCTGAAGGGAAGCCTTTCTCTAACCTTTGATGAACTAGTCCATGCAAAAAACCCACGGAAAGGATCTGAGACACTATCTAACAGACCCGATTCACCTGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGATTCTGGTAGTTCTAAGAAAAGAAAAGCTAAGAAAAGGTCGAAATCCCATGCAAAAGAAACAAGTTCACCTAGTGTGCCAAATATACCTAATTCTCATGGGCTTTCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTTATGCACATGAAGAATGGTGATAGTACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGAAATAAGCTTCGCGATCCTCGACGGAAAAGTCAAATCATATGTGATTCAAGATTTGAGAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTTCTAGAGTCACACTTCTTCATCAAAGAAGATGCCCAGATAAGTGACCTCCAAGGGAGTGTTGCCGATACTGACTCAAATCTGTTGGAGGCTGATGGGCACACAGATGCGTCGGGAAAGAATAGCAAAGAGAAGAAACGCAAGACACGGAGAAAAGGTGATGGGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCCATTGATATTCACAACATTAATTTAATTTACCTAAAACGTAATTTGGTGGAATATCTGATTGAAGATGAGGAGAGTTTTCTTGAAAAGGTTGTTGGTTCTTTTGTGAGGATAAGGATATCAGGCAATACACAAAAACAAGATATATACCGGCTGGTTCAAGTTGTAGGTACAAGCAAAGCATCCGAGCCTTATAAAGTTGGTAAAAAGATGACAGATATTTTACTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGACATTATCTCGAATCAAGAGTTCACTGAGGAGGAGTGCAAGCGTCTCAGACAGAGCATTAAGTGTGGAATCCTTAACCGTCTGACTGTGGGCGACCTCCATGAGAGAGCGATGTTGCTTCAAGATGCTAGAGTTAAGGATTGGATGGAAACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAAAAAGGGCGCCGAAAAGAGCTTAGAGAATGTGTTGAGAAACTACAACTTTTGAAGACACCTGAGGAGCGGCAACGCAGACTGGAGGAATTACCAGAAATACATACAGATCCAAATATGGATCCTAGTCACGAATCCGAAGATGAAGATGAAGCTGATGAAAAGAGACTAGAACCTTACACCTTGTCTAGAGGCTCAAGCTTCAGCAGGAGGACAAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATTCCTGGAGCGGGACAAGAAACTTTTCGAACATGAATCGGGATTTGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAACCATGGCGACGATGCTATTGGCACTGGCGAAATAATAAATGAAAATTCTTGGAGTCAAGGAAGAGAGAGAGATGTTAAAGAAACAAATAAGTGGGGCAAGCAACAAGTTTCTCCTGGTTCAGAAAAAACTGCTGGGAATGCCTTGTCTGGGGTAGCTTCTGAGTTATCTTCTGCTGCCCGTTCAGTAAATCCAGCAACATCTCCTTCTGTAGGGACTACTCAAAATGCTGCTCTAGTTAATGAAACCGAAAAGATATGGCGCTATCAGGATCCATCTGGAAAAGTGCAAGGACCGTTTTCGCTGGTGCAACTACGTAAGTGGAGTACTACAGGCTATTTTCCTGCAGACTTGAAAGTATGGAGAACCTCAGACAAGCAAGAGGATGCCCTACTTTTGACCGACGTCTTAGCAGGAAAGATCCCGAAGGACACTTCATCGATGGACAATAATTTCCAAGCACACACACTGGCTTCTTTAGTTGTATCAAAGCATCAGGGAGCCACTTTGCAGTCAGGTATGGATGGTCAGAGTACTGGTACTTCAAATCCACATACTAATCAAACTTCGTATGGCCAATCTTCTGGAGGAAGATGGAACTCTCAAAATGAAGTTAGCCCTACTGGTAGACCAGCCTCGACTTCCATAGAAGTTCTGAGGTACTCGGGAGACAGATGGTCTTCTGACCATGGTAATAAGAACTTCCCAAGTCTTCCTTCTCCCACTCCTGGAGGAACAAAGCACCAGCCATTTCGAATGGCTGCATCGCTCGCCTCTTCAGGTGGTGGCGGCGGGTCTCAGAACAATTCCTTGCACTCGCATTCTAGCCTGAATTCAGCAGAAAAGGTCATGGGTTTGGGTCCTATAAATGCATTTCAAAATCATCATTCACAGCCGGTTATGCCATCACCTGGTGATACTTCGGTCAATCCAGCTGCCGATATTAAAAGCATTAGCGCAAATCTTCATTCTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAACTCAAAAAGTTGAACCAAACATTTCCTCTAGCATGCCGCGAGCACAAGCTCGTCAAAGTCGATGGGGGGAGATGTTGCCTGTACAAAATGGTGCCACATCGTTCAGTGCAGGAAATTCGACATCGAGTTTCTCCACACCCGGTTTGACCAGTTTTCCCAATAACCCGCCACACATACAGTCTTCAACTCCACACAATAACCCACCACACATTCAGTCTTCGAATCCACCAAGTGTACCTTGGGGAATGGGTGCTCCACAAGGTCAAAGTACCGCTCCACGACCCAGGTCGGAGTCTCAGAGCCAAAGCTGGGGGCCAAGGCCATCAGGAAATCCAAACATGGGTTGGAGTGCCTCATCTGCACCTCCGAACGCGACTGGTATGATGTGGGGATCTGCTGCTCAAAGTTCTGCTCCTGTTGGTACAAACGCAGGTTGGATTGCACCAGGTCAAGGACCACCAGCCGGAAACAACATGCAAGGATGGCAAGCACACGGCCCTATTCCACCTTCGGCAAACGCGACATCGGGATGGGTTGCCCCCAACATCAGGCCGATGCCACCAATGAACGTCAACCCCAATTGGCATGTCCCATCTGCTGCTAATCAGGGCATGTGGAGTAATGAGCATGGTAAAAGTGGGGATAGATTCTTGAACCAGGACGGTGGCTCTCACGGGGGAGACCCGGGGAATGGAGGTAAATCGTGGGGGATGCAGCCCTCTTATGGTGTTGGTGGGAGTTCTTCTAGGCTTCCTTATAACAACAAAGGGAATGTGTGCAAATATCATGAAAGTGGACACTGCAAGAAATGA 5028 45.27 MEAEENDSSKHEEQAPLLHVDDDALRKLQSNEEQHCVFNSAIDETEFRPITGLESLQHSDAILGDESFVAETCPQMEKKDAAEVAELAEEKENNVIEDLAEDSVKLEVEPEIGLLGQRVFGDEVAEFGEGELLPGMVMGCVVENQVEGSVLMADFPENTVGCTVITEETCVTDVLDERTLGVASVFVTDVTNSKTEVEENADEPYDSQNVELPKEENVAMEDRELGVSVQLVEDSEVKVNLVDGAVADGQMLKMENVSSNTDEVGLTSLDGESDWAVNVENAKDKTVEMGEMCKDEATDEAMMENLADGTLEIKGVDVTDNGIDTLKIENTEDKEAGVQGLSVADESAEVADTDNVEDKTTAQSEEMDMEEEAEEADDIVYLVHEETGSEETDANMTEAAEEVEKMDVTEDVDEPRKSSSGGKRKRGKSSKAPARVPSRKKKVEEDVCFICFDGGELVLCDRRGCPKAYHPSCVNRDVAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKKSVFSCVRGNKGFCEPCMKFVMLIEKNEQGNTEKGQIDFNEKNNWEYLFKEYWTELKGSLSLTFDELVHAKNPRKGSETLSNRPDSPGELCDGNVDGGSDLDVSENEDSGSSKKRKAKKRSKSHAKETSSPSVPNIPNSHGLSTDNNVEWASKELLEFVMHMKNGDSTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRFENLFGKPRVGHFEMLKLLESHFFIKEDAQISDLQGSVADTDSNLLEADGHTDASGKNSKEKKRKTRRKGDGRGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFLEKVVGSFVRIRISGNTQKQDIYRLVQVVGTSKASEPYKVGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLHERAMLLQDARVKDWMETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEELPEIHTDPNMDPSHESEDEDEADEKRLEPYTLSRGSSFSRRTREPVSPGKGGSNLNDSWSGTRNFSNMNRDLSRNLSGKGFSNHGDDAIGTGEIINENSWSQGRERDVKETNKWGKQQVSPGSEKTAGNALSGVASELSSAARSVNPATSPSVGTTQNAALVNETEKIWRYQDPSGKVQGPFSLVQLRKWSTTGYFPADLKVWRTSDKQEDALLLTDVLAGKIPKDTSSMDNNFQAHTLASLVVSKHQGATLQSGMDGQSTGTSNPHTNQTSYGQSSGGRWNSQNEVSPTGRPASTSIEVLRYSGDRWSSDHGNKNFPSLPSPTPGGTKHQPFRMAASLASSGGGGGSQNNSLHSHSSLNSAEKVMGLGPINAFQNHHSQPVMPSPGDTSVNPAADIKSISANLHSLVQSINSRNPPIETQKVEPNISSSMPRAQARQSRWGEMLPVQNGATSFSAGNSTSSFSTPGLTSFPNNPPHIQSSTPHNNPPHIQSSNPPSVPWGMGAPQGQSTAPRPRSESQSQSWGPRPSGNPNMGWSASSAPPNATGMMWGSAAQSSAPVGTNAGWIAPGQGPPAGNNMQGWQAHGPIPPSANATSGWVAPNIRPMPPMNVNPNWHVPSAANQGMWSNEHGKSGDRFLNQDGGSHGGDPGNGGKSWGMQPSYGVGGSSSRLPYNNKGNVCKYHESGHCKK 1675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35448557 35459214 + Sed0010772.1 Sed05g2290 714916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2290 1675 MobiDBLite consensus disorder prediction 645 663 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1236 1283 - -
Sed05g2290 1675 SUPERFAMILY Plus3-like 805 934 IPR036128 GO:0003677(InterPro)
Sed05g2290 1675 ProSiteProfiles Zinc finger PHD-type profile. 445 511 IPR019787 -
Sed05g2290 1675 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 363 1675 - -
Sed05g2290 1675 Gene3D SWIB/MDM2 domain 658 753 IPR036885 -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1082 1114 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1323 1342 - -
Sed05g2290 1675 CDD SWIB-MDM2_like 668 743 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1495 1547 - -
Sed05g2290 1675 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 537 IPR013083 -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1236 1318 - -
Sed05g2290 1675 CDD PHD5_NSD 447 492 - -
Sed05g2290 1675 SMART PHD_3 447 493 IPR001965 -
Sed05g2290 1675 Gene3D - 1154 1212 IPR035445 -
Sed05g2290 1675 SUPERFAMILY FYVE/PHD zinc finger 419 492 IPR011011 -
Sed05g2290 1675 SUPERFAMILY SWIB/MDM2 domain 664 744 IPR036885 -
Sed05g2290 1675 Pfam GYF domain 1155 1195 IPR003169 GO:0005515(InterPro)
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1398 1548 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1328 1342 - -
Sed05g2290 1675 ProSitePatterns Zinc finger PHD-type signature. 448 508 IPR019786 -
Sed05g2290 1675 ProSiteProfiles GYF domain profile. 1152 1206 IPR003169 GO:0005515(InterPro)
Sed05g2290 1675 Gene3D - 805 935 IPR036128 GO:0003677(InterPro)
Sed05g2290 1675 MobiDBLite consensus disorder prediction 398 420 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 979 1048 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1100 1114 - -
Sed05g2290 1675 CDD Bbox1 493 519 - -
Sed05g2290 1675 SMART swib_2 663 748 IPR019835 -
Sed05g2290 1675 ProSiteProfiles SWIB/MDM2 domain profile. 662 745 IPR003121 -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1296 1312 - -
Sed05g2290 1675 CDD GYF 1152 1207 IPR003169 GO:0005515(InterPro)
Sed05g2290 1675 MobiDBLite consensus disorder prediction 766 793 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 387 438 - -
Sed05g2290 1675 Pfam Plus-3 domain 809 912 IPR004343 GO:0003677(InterPro)
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1398 1422 - -
Sed05g2290 1675 FunFam Zinc finger CCCH domain-containing protein 19 437 537 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1431 1474 - -
Sed05g2290 1675 FunFam Zinc finger CCCH domain-containing protein 19 805 934 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1606 1661 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 979 998 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1018 1048 - -
Sed05g2290 1675 SUPERFAMILY GYF domain 1143 1205 IPR035445 -
Sed05g2290 1675 SMART rtf1 804 914 IPR004343 GO:0003677(InterPro)
Sed05g2290 1675 SMART gyf_5 1153 1208 IPR003169 GO:0005515(InterPro)
Sed05g2290 1675 Pfam SWIB/MDM2 domain 670 743 IPR003121 -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 421 436 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 1646 1660 - -
Sed05g2290 1675 MobiDBLite consensus disorder prediction 591 663 - -
Sed05g2290 1675 ProSiteProfiles Plus3 domain profile. 804 937 IPR004343 GO:0003677(InterPro)
Sed05g2290 1675 MobiDBLite consensus disorder prediction 344 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3570 Sed-Chr4:45079585 Sed05g2290 Sed-Chr5:35448557 1.60E-49 dispersed
Sed05g2290 Sed-Chr5:35448557 Sed13g1009 Sed-Chr13:8098307 2.20E-168 dispersed
Sed04g3903 Sed-Chr4:47182415 Sed05g2290 Sed-Chr5:35448557 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g34 . . . . . . . . . . . . . . Sed05g2290 . . Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38599 PF03126 Plus-3 3.20E-24 No_clan Sed TR