Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2301 ATGGGCGATTCTCGCGGTGGCTGCTGCCCGACCATGGATCTGTTCCGCTCCGAGCCGATGCAGCTGGTGCAGCTCATCATTCCCATCGAGGCTGCGCATCGCACCATCTCCTACCTCGGCGATCTCGGCCTTCTCCAGTTCAAAGATCTCAATGCTGATAAAAGTCCGTTCCAGCGTACTTATGCTGCACAGATTAAAAGATGTGGAGAGATGGCACGCAAATTGCATTTTTTCAAGGAACAGATGTTGAAGGCTGGATTGTCAAGCAAAAACTCAGTGCCCCAAGCTGATCTCAGTGTAGACGACCTTGAGGTCAAACTTGGTGAGCTTGAGGCTGAACTGGTTGAGGTGAATGCTAATAGTGAGAAGCTGCAGCGCTCTTACAATGAACTTGTGGAGTACAAGCTTGTTCTGGAGAAGGCTGGTGATTTTTTCACTACAGCACAAAGCAGTGCTGTAGAGCAGCAAAGGGAATTTGAATCACGAAGAGTTGGTGGAGATTCAATAGAAGTTCCATTGTTGTTGGACCAAGAATCATCTGGTGATCAGTCAAAGCTGGTTAATTTGGGATTTCTCTCTGGTCTTGTTCCTCGCGAAAAATCTATGGCATTTGAGAGGATATTATTTCGTGCTACCAGAGGTAATGTGTTTCTGAAGCAGGCTGCAGTTGAGGAACCTGTTGCAGATCCTATTTCTCGAGAGAAGGTTGAGAAAAACGTCTTTGTTGTTTTTTACTCTGGAGAAAGAGCAAAGAATAAGATTCTAAAAATATGTGAAGCATTTGGTGCAAATCGTTACCCTTTTACTGAGGACTTGGGGAAACAAGCTCAAATGATTGCCGAGGTTTCTGGAAAACTATCTGAGCTGAAGGCTACAATAGATGTAGGGCTGCTGCACCGGGGTAATCTGTTGCAGACTATTGGAGAACATTTTGAAGATTGGAATCTCATGGCGAGGAAGGAAAAATCCATATACCATATCTTGAACATGCTTAGCCTTGATGTTACCAAAAAATGTATGGTTGCTGAGGGGTGGGGTCCTGTTTTTGCAACAAAGCAGATTCAAGATGCACTCCAGCGAGCATCATCTGATTCCAACTCCCAAGTTGGACCAATTTTCCAGGTTTTATTAACTACAGAAGCGCCACCTACTTATTTTCGGACAAACAAATTCTCCTCTGCTTTTCAAGACATCGTCGATGCATATGGGGTGGCAAAGTATCAAGAAGCCAATCCTGGTGTATACACAATCGTCACGTTTCCATTTCTATTTGCTATTATGTTTGGTGATTGGGGGCATGGAATATGTCTGTTACTTGCAACACTGTATTTTATATTGCGGGAAAAAAAACTTTCTTCTCAGAAGCTTGGAGATATCACTGAAATGGCCTTTGGTGGACGCTATGTCATTTTGATGATGTCACTATTTTCGATATACACAGGTCTGATCTATAATGAGTTTTTCTCAGTGCCATTTGAACTGTTTGGTCGCTCTGCATATGAATGCCGTAGTCCTGATTGCAGAGATTCTGCTACTGTGGGGTTGATAAAGGTGGGTTCTACATATCCATTTGGCCTGGATCCTGTATGGCATGGCACTCGAAGTGAGCTTCCATTTCTTAACTCACTGAAAATGAAAATGTCGATCCTCATTGGAGTTGCACAAATGAACCTTGGAATTATAATAAGCTATTTCAATGCTACATTTTTCCGGAACAGCATCAATATCTGGTTCCAATTCCTGCCTCAGATAATATTTCTGAACAGCCTTTTCGGTTATCTTTCACTTCTCATCATCATAAAGTGGTGCACGGGATCAAACGCTGATCTGTACCATGTAATGATATACATGTTTCTGAGCCCGACCGATGATCTGGCTGAAAACCAACTTTTTCCTGGGCAGAAAAATATTCAGCTTGTGCTTCTCTTACTGGCCTTTATTGCTGTGCCATGGATGCTGCTTCCAAAACCTTTTCTTTTGAAGAGACAGCACGAACAGAGGTTCCAAGGCCAGTCGTATGCGCCAATTCCAAGTGGTGACGATTCCCTTGAGTTGGATTCGCATCATGATTCACATGGTCATGAGGAGTTTGAGTTCAGTGAGGTTTTTGTGCATCAGCTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCAAATACAGCCTCCTATCTTCGATTATGGGCTTTAAGTCTTGCGCATTCAGAGTTGTCAAGCGTGTTTTATGACAAGGTTCTCGTTCTCTCTGCGGGGTACGACAACTATATAATCCTGATAGTAGGCATTATTGTTTTCATTTTCGCTACCGTTGGCGTGTTACTATTGATGGAGACTCTGAGTGCCTTCCTTCACGCACTGCGTCTTCATTGGGTAGAGTTCCAAAACAAGTTCTACGAGGGAGACGGGTACAAATTCCAGCCTTTCTCATTCGCATTGCTCGGCGAAGATGATGAATGA 2457 43.51 MGDSRGGCCPTMDLFRSEPMQLVQLIIPIEAAHRTISYLGDLGLLQFKDLNADKSPFQRTYAAQIKRCGEMARKLHFFKEQMLKAGLSSKNSVPQADLSVDDLEVKLGELEAELVEVNANSEKLQRSYNELVEYKLVLEKAGDFFTTAQSSAVEQQREFESRRVGGDSIEVPLLLDQESSGDQSKLVNLGFLSGLVPREKSMAFERILFRATRGNVFLKQAAVEEPVADPISREKVEKNVFVVFYSGERAKNKILKICEAFGANRYPFTEDLGKQAQMIAEVSGKLSELKATIDVGLLHRGNLLQTIGEHFEDWNLMARKEKSIYHILNMLSLDVTKKCMVAEGWGPVFATKQIQDALQRASSDSNSQVGPIFQVLLTTEAPPTYFRTNKFSSAFQDIVDAYGVAKYQEANPGVYTIVTFPFLFAIMFGDWGHGICLLLATLYFILREKKLSSQKLGDITEMAFGGRYVILMMSLFSIYTGLIYNEFFSVPFELFGRSAYECRSPDCRDSATVGLIKVGSTYPFGLDPVWHGTRSELPFLNSLKMKMSILIGVAQMNLGIIISYFNATFFRNSINIWFQFLPQIIFLNSLFGYLSLLIIIKWCTGSNADLYHVMIYMFLSPTDDLAENQLFPGQKNIQLVLLLLAFIAVPWMLLPKPFLLKRQHEQRFQGQSYAPIPSGDDSLELDSHHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLVLSAGYDNYIILIVGIIVFIFATVGVLLLMETLSAFLHALRLHWVEFQNKFYEGDGYKFQPFSFALLGEDDE 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35519962 35533591 + Sed0026213.1 Sed05g2301 714927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2301 818 PANTHER VACUOLAR PROTON ATPASES 12 814 IPR002490 GO:0007035(PANTHER)|GO:0016471(PANTHER)|GO:0033179(InterPro)|GO:0046961(InterPro)|GO:0051117(PANTHER)|GO:1902600(InterPro)
Sed05g2301 818 Coils Coil 100 127 - -
Sed05g2301 818 Pfam V-type ATPase 116kDa subunit family 38 810 IPR002490 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Sed05g2301 818 PIRSF ATP6V0A1 10 818 IPR026028 GO:0000220(InterPro)|GO:0046961(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1719 Sed-Chr3:11211976 Sed05g2301 Sed-Chr5:35519962 0.00E+00 dispersed
Sed04g3912 Sed-Chr4:47262737 Sed05g2301 Sed-Chr5:35519962 0.00E+00 dispersed
Sed05g2301 Sed-Chr5:35519962 Sed05g2892 Sed-Chr5:39910454 4.40E-292 dispersed
Sed04g3911 Sed-Chr4:47262737 Sed05g2301 Sed-Chr5:35519962 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2301 K02154 - csv:101211364 1487.24