Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2303 ATGTATCGAAGTTTCTTCTTCTTCTCCTTCGCCGCAGCGGCTGCCGCCCTCTGCTCATCGGAGTCTCTGCCCGATTCCCTGATTCGTCAGGTTGTCGACAACGATGGCGCCGATTCGAACCTTCCCCAGCTCGGAGCTGAGCACCATTTTTCGATCTTCAAGCGAAAGTTCGGGAAATCGTATAGTTCCGAGGAAGACCACGATCGCAGGTTCGGGATCTTCAAGGCTAATATGCGACGGGCGCTGCGTCATCAATCCTTTGATCCATCTGCTGTTCATGGCGTCACTCAGTTCTCCGATTTGACCCCTTCCGAGTTTCGTACTGCATTTCTAGGGCTTCGAGGTAAGCGGCTTCGACTACCTGCAGATGCTAGTGAGGCTCCGATTCTTCCTACGGAGAATCTTCCGACCGACTTCGATTGGAGAGAACGCGGCGCCGTAACTGCTGTGAAAAATCAGGGATCTTGCGGATCGTGCTGGAGTTTCAGCACAACCGGTGCCCTTGAAGGTGCTAACTTCCTTGCCACAGGGGAACTTGTTAGCTTAAGCGAACAGCAGCTGCTAGATTGTGATCACGAGTGTGATCGAGAGGAAGGCGATTCGTGCGACTCCGGTTGCAATGGCGGGCTAATGAACACTGCATTTGAATACACACTAAAGGCCGGAGGTCTAATGAGGGAGCAAGATTATCCCTATACTGCAACTGATGGTGGAACCTGCAAGTTTGAGAGCTCCAAGATTGCTGCATCAGTTGCCAATTTCAGCGTTGTTTCACTTGATGAACATCAAATTGCTGCAAATCTCGTCCAAAATGGCCCACTTGCAATTGCTATCAATGCGGTGTTCATGCAGACATACATAGGTGGAGTATCTTGTCCATTCATATGTTCAAAGCGGCTCGATCATGGAGTTTTGCTGGTTGGTTACGGCTCGGCTGGCTACGCTCCCATCCGAATGAGAGACAAGAATTACTGGATCATAAAAAATTCTTGGGGACAAAACTGGGGAGAAAATGGGTATTACAGGATTTGCAGAGGTAGGAATGTGTGTGGAGTTGATTCCTTGGTCTCAACTGTTGCAGCAGCAGCTGTTCATACTCCCATTGCAGCACAAGAAGCTCACTAG 1125 49.87 MYRSFFFFSFAAAAAALCSSESLPDSLIRQVVDNDGADSNLPQLGAEHHFSIFKRKFGKSYSSEEDHDRRFGIFKANMRRALRHQSFDPSAVHGVTQFSDLTPSEFRTAFLGLRGKRLRLPADASEAPILPTENLPTDFDWRERGAVTAVKNQGSCGSCWSFSTTGALEGANFLATGELVSLSEQQLLDCDHECDREEGDSCDSGCNGGLMNTAFEYTLKAGGLMREQDYPYTATDGGTCKFESSKIAASVANFSVVSLDEHQIAANLVQNGPLAIAINAVFMQTYIGGVSCPFICSKRLDHGVLLVGYGSAGYAPIRMRDKNYWIIKNSWGQNWGENGYYRICRGRNVCGVDSLVSTVAAAAVHTPIAAQEAH 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35538863 35541405 - Sed0019860.1 Sed05g2303 714929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2303 374 Pfam Papain family cysteine protease 135 358 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2303 374 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 56 353 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Sed05g2303 374 SMART Inhibitor_I29_2 50 106 IPR013201 -
Sed05g2303 374 PRINTS Papain cysteine protease (C1) family signature 324 330 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2303 374 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2303 374 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2303 374 Gene3D Cysteine proteinases 27 360 - -
Sed05g2303 374 SMART pept_c1 135 360 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed05g2303 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 324 343 IPR025661 -
Sed05g2303 374 CDD Peptidase_C1A 136 359 IPR039417 -
Sed05g2303 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Sed05g2303 374 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Sed05g2303 374 FunFam Cysteine protease RD19A 26 360 - -
Sed05g2303 374 Pfam Cathepsin propeptide inhibitor domain (I29) 50 106 IPR013201 -
Sed05g2303 374 SUPERFAMILY Cysteine proteinases 47 359 IPR038765 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2303 K01373 - - csv:101217613 597.816
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2303 Sed-Chr5:35538863 Sed06g2018 Sed-Chr6:44288466 2.60E-106 dispersed
Sed01g0273 Sed-Chr1:2111724 Sed05g2303 Sed-Chr5:35538863 1.80E-163 wgd
Sed05g2303 Sed-Chr5:35538863 Sed05g3537 Sed-Chr5:43995254 2.60E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102