Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2305 ATGGCCAAACCCAAGCCCCCGAAGCAAACCCTAGATTCCTACACCGTCAAACGCATCAACAAATCCATCAAAGGTAAACACAAAATCCACCGATTCTTCCTTCTCTTCTCCCGTTCTGTTGCTGTTTTTCTGATGATTCCGTTTCTGGGTCTGTTTCTGATCCTCCGAATCTTCGTGTTCTTGTTCTTCTCAGCCGCCGATTGCGTGCTTATGAGACCTTCCGAACCCTCGAAGCCTTCGTATGTGGCGAAGATTGAGAAGATTGAAGCGGATTCTCGTGGAGCCAATGTGAAGATCCATGTTCGCTGGTACTACCGGCCGGAGGAATCTATTGGCGGCCGGAGACAGTTTCATGGCTCGAAGGAGCTGTTTCTCTCCGACCATTATGATGTTCAGAGCGCTGATACCGTCGAGGGGAAGTGCACGGTGCATACGTTTAAGAATTATACTAAGCTTGATGCTGTTGGTAATGATGATTATTTTTGCCGTTTCGACTATAATTCCGCTACTGGAGCTTTCAATCCCGATCGAGTGGCTGTGTATTGCAAATGTGAGATGCCTTATAATCCCGATGACCTAATGGTTCAGTGCGAGAGCTGCAGTGATTGGTTTCATCCGGCTTGTATAGAAATGACTGTTGAAGAAGCTAAAAAACTAGACCACTTCTTCTGCGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCAAAGTCTACATCTAAAATTGCCGAGACAAAGGTGGATACGAAGCGACGCCGCAGGTGA 771 46.56 MAKPKPPKQTLDSYTVKRINKSIKGKHKIHRFFLLFSRSVAVFLMIPFLGLFLILRIFVFLFFSAADCVLMRPSEPSKPSYVAKIEKIEADSRGANVKIHVRWYYRPEESIGGRRQFHGSKELFLSDHYDVQSADTVEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTVEEAKKLDHFFCESCSSEGQKKLQNSKSTSKIAETKVDTKRRRR 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35542698 35547324 - Sed0017186.2 Sed05g2305 714931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2305 256 ProSitePatterns Zinc finger PHD-type signature. 182 227 IPR019786 -
Sed05g2305 256 Pfam BAH domain 67 175 IPR001025 GO:0003682(InterPro)
Sed05g2305 256 ProSiteProfiles Zinc finger PHD-type profile. 179 230 IPR019787 -
Sed05g2305 256 PANTHER OS08G0421900 PROTEIN 1 248 - -
Sed05g2305 256 Pfam PHD-finger 182 227 IPR019787 -
Sed05g2305 256 Gene3D - 62 173 IPR043151 -
Sed05g2305 256 MobiDBLite consensus disorder prediction 230 256 - -
Sed05g2305 256 SUPERFAMILY FYVE/PHD zinc finger 171 234 IPR011011 -
Sed05g2305 256 SMART PHD_3 181 228 IPR001965 -
Sed05g2305 256 MobiDBLite consensus disorder prediction 230 244 - -
Sed05g2305 256 FunFam Bromo-adjacent homology (BAH) domain-containing protein 174 244 - -
Sed05g2305 256 SMART BAH_4 61 177 IPR001025 GO:0003682(InterPro)
Sed05g2305 256 ProSiteProfiles BAH domain profile. 61 177 IPR001025 GO:0003682(InterPro)
Sed05g2305 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 245 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2305 K25868 - - csv:101211114 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3914 Sed-Chr4:47282270 Sed05g2305 Sed-Chr5:35542698 5.40E-112 dispersed
Sed05g2305 Sed-Chr5:35542698 Sed08g1939 Sed-Chr8:33808662 4.70E-83 dispersed
Sed05g2304 Sed-Chr5:35542698 Sed05g2305 Sed-Chr5:35542698 4.10E-120 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38601 PF01426 BAH 9.70E-20 No_clan Sed TR