Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2312 | ATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACTCTGCCGGAAACTGTTCTGACACTCTCTCTGTTCTTGACAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGATTTTAAGCCAGGCAGTGGATTACGGCGGTGGGTTTTCGCCGCCGGTGGATGTTCCGGCGGATCACTTCATGGGGTTTCCCGGCTTCGTGAGTGGCGGCAGCGGCGGTGGAGGAGGTGGTGGTGGTGGGTTGTCGCTTGTTGAGATGATAATGGGGGCTGCGAAGCCTGACCCTGGATTGGAAGATGGGTGGTCTCACATGGATAAGTTTGATCCTTCTTTGTTGCTGAATGCCACTGCTTATGACCTTAATTCTTCCCTCTCTAGAACCTCTAGCTGTCCGCCTGCGGTTGCTGCGGCGGTGGCCGAGAAGATCGCGTCCGCGCGCGGAAGAGAGAGCTTCAAGAAGAGGAAAGCTGAGAAAGTTCACACCACAACAACCATCAACAAGGTGAATGAGGAGGAAGATAACAACAACAGCAGCAGCAACAAAGCAAAGAGGATCAAAAGAAGTGCAGAGGAAGGGGAACTATCCAAAACCACCACAACAGATCAAAACAGCACCAAAAACAACTCAACCACAACAAACAACAACAGAGAAACTTCAGCAGATACCTCAAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCCGAGCTCGCCGTGGCCAAGCCACGGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTCGAGTTCTTGTCCATGAAATTAGCGGCAGTCAATCCAAGGCTAGACATCAATATCGAGGATCTCATCAACAACGAGGTATTGCAGAACTTTCCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCATCACCGTACATACAATTCAATCCAAACAATCAACAACGAATCGTCCCCTGTTGCGAATTAGAAATGGGAATCAATACCTCCGATGCCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAGTTTCCTGGATTCATCTCTCCTCACCCAATTTCAACCCTCCGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCGTTTTCATCTCAACCATATTCAGGTTCAATTGAAGGAAGCAATATAAAGATGGAAATGTGA | 1329 | 47.71 | MNRALPEMLHCLNSAGNCSDTLSVLDRQRARLKWQQDQILSQAVDYGGGFSPPVDVPADHFMGFPGFVSGGSGGGGGGGGGLSLVEMIMGAAKPDPGLEDGWSHMDKFDPSLLLNATAYDLNSSLSRTSSCPPAVAAAVAEKIASARGRESFKKRKAEKVHTTTTINKVNEEEDNNNSSSNKAKRIKRSAEEGELSKTTTTDQNSTKNNSTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDINIEDLINNEVLQNFPAIGGMSSEMTDPSPYIQFNPNNQQRIVPCCELEMGINTSDAALRRTISAPVSFPESFLDSSLLTQFQPSGWDVDLQNLYNVGFDQGRSSNAFSSQPYSGSIEGSNIKMEM | 442 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35584524 | 35588321 | - | Sed0008512.1 | Sed05g2312 | 714938 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2312 | 442 | FunFam | Basic helix-loop-helix transcription factor | 244 | 316 | - | - | |
Sed05g2312 | 442 | CDD | bHLH_AtBPE_like | 237 | 322 | - | - | |
Sed05g2312 | 442 | MobiDBLite | consensus disorder prediction | 175 | 195 | - | - | |
Sed05g2312 | 442 | MobiDBLite | consensus disorder prediction | 146 | 168 | - | - | |
Sed05g2312 | 442 | MobiDBLite | consensus disorder prediction | 222 | 256 | - | - | |
Sed05g2312 | 442 | Gene3D | - | 244 | 319 | IPR036638 | GO:0046983(InterPro) | |
Sed05g2312 | 442 | MobiDBLite | consensus disorder prediction | 146 | 256 | - | - | |
Sed05g2312 | 442 | Coils | Coil | 169 | 189 | - | - | |
Sed05g2312 | 442 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 147 | 349 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Sed05g2312 | 442 | MobiDBLite | consensus disorder prediction | 196 | 221 | - | - | |
Sed05g2312 | 442 | Pfam | Helix-loop-helix DNA-binding domain | 251 | 298 | IPR011598 | GO:0046983(InterPro) | |
Sed05g2312 | 442 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 245 | 315 | IPR036638 | GO:0046983(InterPro) | |
Sed05g2312 | 442 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 247 | 297 | IPR011598 | GO:0046983(InterPro) | |
Sed05g2312 | 442 | SMART | finulus | 253 | 303 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g3920 | Sed-Chr4:47316390 | Sed05g2312 | Sed-Chr5:35584524 | 1.20E-150 | dispersed | |
Sed05g2312 | Sed-Chr5:35584524 | Sed11g1528 | Sed-Chr11:30857573 | 1.60E-46 | dispersed | |
Sed05g2312 | Sed-Chr5:35584524 | Sed05g2313 | Sed-Chr5:35584524 | 6.50E-181 | tandem | |
Sed04g3919 | Sed-Chr4:47315722 | Sed05g2312 | Sed-Chr5:35584524 | 1.60E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38602 | PF00010 | HLH | 1.20E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2312 | - | - | - | 0.0 |