Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2313 ATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACTCTGCCGGAAACTGTTCTGACACTCTCTCTGTTCTTGACAGGCAGAGAGCTCGTTTGAAATGGCAGCAAGATCAGATTTTAAGCCAGGCAGTGGATTACGGCGGTGGGTTTTCGCCGCCGGTGGATGTTCCGGCGGATCACTTCATGGGGTTTCCCGGCTTCGTGAGTGGCGGCAGCGGCGGTGGAGGAGGTGGTGGTGGTGGGTTGTCGCTTGTTGAGATGATAATGGGGGCTGCGAAGCCTGACCCTGGATTGGAAGATGGGTGGTCTCACATGGATAAGTTTGATCCTTCTTTGTTGCTGAATGCCACTGCTTATGACCTTAATTCTTCCCTCTCTAGAACCTCTAGCTGTCCGCCTGCGGTTGCTGCGGCGGTGGCCGAGAAGATCGCGTCCGCGCGCGGAAGAGAGAGCTTCAAGAAGAGGAAAGCTGAGAAAGTTCACACCACAACAACCATCAACAAGGTGAATGAGGAGGAAGATAACAACAACAGCAGCAGCAACAAAGCAAAGAGGATCAAAAGAAGTGCAGAGGAAGGGGAACTATCCAAAACCACCACAACAGATCAAAACAGCACCAAAAACAACTCAACCACAACAAACAACAACAGAGAAACTTCAGCAGATACCTCAAAAGAAAACTCCAAAGCCTCAGAGGTTCAAAAGCCTGATTACATTCATGTCCGAGCTCGCCGTGGCCAAGCCACGGATAGCCACAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCAGGAATGCTCGACGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTCGAGTTCTTGTCCATGAAATTAGCGGCAGTCAATCCAAGGCTAGACATCAATATCGAGGATCTCATCAACAACGAGGTATTGCAGAACTTTCCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCATCACCGTACATACAATTCAATCCAAACAATCAACAACGAATCGTCCCCTGTTGCGAATTAGAAATGGGAATCAATACCTCCGATGCCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAGTTTCCTGGATTCATCTCTCCTCACCGTAAGTTCTTCCTTGATCTTCAATTTTCCGATTCGATTCCGATCGTTTCTGGTTTGTAATTTCATCAAATCAACCATGGAACGCAGCAATTTCAACCCTCCGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCGTTTTCATCTCAACCATATTCAGGTTCAATTGAAGGAAGCAATATAA 1401 47.25 MNRALPEMLHCLNSAGNCSDTLSVLDRQRARLKWQQDQILSQAVDYGGGFSPPVDVPADHFMGFPGFVSGGSGGGGGGGGGLSLVEMIMGAAKPDPGLEDGWSHMDKFDPSLLLNATAYDLNSSLSRTSSCPPAVAAAVAEKIASARGRESFKKRKAEKVHTTTTINKVNEEEDNNNSSSNKAKRIKRSAEEGELSKTTTTDQNSTKNNSTTTNNNRETSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDINIEDLINNEVLQNFPAIGGMSSEMTDPSPYIQFNPNNQQRIVPCCELEMGINTSDAALRRTISAPVSFPESFLDSSLLTVSSSLIFNFPIRFRSFLVCNFIKSTMERSNFNPPGGTWICRICTMWVSIKEDHQTRFHLNHIQVQLKEAI 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35584524 35588321 - Sed0008512.2 Sed05g2313 714939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2313 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 245 315 IPR036638 GO:0046983(InterPro)
Sed05g2313 466 CDD bHLH_AtBPE_like 237 322 - -
Sed05g2313 466 MobiDBLite consensus disorder prediction 146 168 - -
Sed05g2313 466 MobiDBLite consensus disorder prediction 175 195 - -
Sed05g2313 466 MobiDBLite consensus disorder prediction 222 256 - -
Sed05g2313 466 Gene3D - 244 319 IPR036638 GO:0046983(InterPro)
Sed05g2313 466 MobiDBLite consensus disorder prediction 146 256 - -
Sed05g2313 466 Coils Coil 169 189 - -
Sed05g2313 466 MobiDBLite consensus disorder prediction 196 221 - -
Sed05g2313 466 FunFam Basic helix-loop-helix transcription factor 244 316 - -
Sed05g2313 466 Pfam Helix-loop-helix DNA-binding domain 251 298 IPR011598 GO:0046983(InterPro)
Sed05g2313 466 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 345 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed05g2313 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 297 IPR011598 GO:0046983(InterPro)
Sed05g2313 466 SMART finulus 253 303 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3919 Sed-Chr4:47315722 Sed05g2313 Sed-Chr5:35584524 6.40E-133 dispersed
Sed05g2313 Sed-Chr5:35584524 Sed11g1528 Sed-Chr11:30857573 2.70E-44 dispersed
Sed05g2312 Sed-Chr5:35584524 Sed05g2313 Sed-Chr5:35584524 6.50E-181 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38603 PF00010 HLH 1.30E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2313 - - - 0.0