Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2320 | ATGGCGGTTTCCGGCAGCAATTCGACGGAGATTCTACCCTCCGGCGAATCTTCTTCTGCTCCTTCCCATTCGTCCTTATCCAACTTGAAAATCTACGCCGCGATAGGTATCATTTTTGCATGCGTGATTGCGGCTTCTGCTCTGATCTTCCTCTGTTTCCGCAGAAATCGCGGCTCGAGAAAGCACAAAATGCAGGTGAAGCACAGCTCCGGCTTGATTCCGTTGGTCTCGAAGGAGATCGCCGAGGTCAAAGAGCCGGATCAGGCGGCGGATTGCGAGAAAGGGGAAGCGGTTAGGGCTGAGATGAAGATGGAGATTGAGTTCGAGAGTGGAGCAGGGCAAAAGAGTCAAGAGAGCTACACGTCGGGCGGCGGCCGGAGCGACGTGTCGGTGGAGGATCCAAACTTAGGGTGGGGGCGCTGGTACAGCTTGAAGGAACTGGAAATGGCTACCGATGGATTTCCGGCCGGGAATGTCATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGCGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAGGCAGAGAGAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTTAGGCACAAGAACTTGGTGGGTCTGGTAGGTTATTGTGCAGAAGGATCAGAGAGGATGCTTGTGTATGAATATGTTGAGAATGGCAACTTGGAGCAATGGCTGCATGGTGATGTGGGGCATGTGAGCCCTCTAACTTGGGATATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGCTTGGCCTATTTGCATGAGGGCTTAGAACCTAAAGTTGTGCACCGTGATGTAAAATCAAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAGGTGTCTGACTTTGGACTTGCAAAGCTCCTACAACCTGAAGCCACCTACGTAACTACTCGTGTCATGGGCACGTTCGGATATGTCTCCCCTGAGTATGCAAGTACAGGTATGCTTAACGAGGGAAGCGACGTGTATAGTTTCGGGGTTCTACTTATGGAGATCATTACTGGTAGAAGCCCAATTGACTATTCTCGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGTGGCGAAGAGGTTGTAGATCCATTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGCGAGTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTCGAGGCTGACGACTTTCCTTATCGTTCGGAGCTCCGATCTGTGCGAGAGAAAGACAACGAGCCTTCGCGTTTAGATGTGCCGAGTAAACTTCCACCAAAGCATGCTGGTATCGATGATATGGAATCTAGAAGGAGATAA | 1413 | 49.82 | MAVSGSNSTEILPSGESSSAPSHSSLSNLKIYAAIGIIFACVIAASALIFLCFRRNRGSRKHKMQVKHSSGLIPLVSKEIAEVKEPDQAADCEKGEAVRAEMKMEIEFESGAGQKSQESYTSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFPAGNVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEREFKVEVEAIGKVRHKNLVGLVGYCAEGSERMLVYEYVENGNLEQWLHGDVGHVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNEPSRLDVPSKLPPKHAGIDDMESRRR | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35671433 | 35675715 | + | Sed0025861.1 | Sed05g2320 | 714946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2320 | 470 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Sed05g2320 | 470 | MobiDBLite | consensus disorder prediction | 436 | 470 | - | - | |
Sed05g2320 | 470 | PANTHER | OS01G0323000 PROTEIN | 22 | 444 | IPR052232 | - | |
Sed05g2320 | 470 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 134 | 229 | - | - | |
Sed05g2320 | 470 | ProSiteProfiles | Protein kinase domain profile. | 154 | 433 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2320 | 470 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 276 | 288 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g2320 | 470 | SMART | serkin_6 | 154 | 425 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g2320 | 470 | Pfam | Protein tyrosine and serine/threonine kinase | 158 | 425 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g2320 | 470 | SUPERFAMILY | Protein kinase-like (PK-like) | 137 | 432 | IPR011009 | - | |
Sed05g2320 | 470 | FunFam | Putative receptor-like serine/threonine-protein kinase | 230 | 440 | - | - | |
Sed05g2320 | 470 | CDD | STKc_IRAK | 160 | 426 | - | - | |
Sed05g2320 | 470 | Gene3D | Transferase(Phosphotransferase) domain 1 | 230 | 439 | - | - | |
Sed05g2320 | 470 | Gene3D | Phosphorylase Kinase; domain 1 | 128 | 229 | - | - | |
Sed05g2320 | 470 | ProSitePatterns | Protein kinases ATP-binding region signature. | 160 | 182 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g2320 | Sed-Chr5:35671433 | Sed10g1235 | Sed-Chr10:26440288 | 9.50E-138 | dispersed | |
Sed04g1581 | Sed-Chr4:30600863 | Sed05g2320 | Sed-Chr5:35671433 | 1.30E-73 | transposed | |
Sed04g3935 | Sed-Chr4:47437172 | Sed05g2320 | Sed-Chr5:35671433 | 2.00E-161 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79209 | PF07714 | PK_Tyr_Ser-Thr | 1.00E-45 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2320 | - | - | - | 0.0 |