Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2320 ATGGCGGTTTCCGGCAGCAATTCGACGGAGATTCTACCCTCCGGCGAATCTTCTTCTGCTCCTTCCCATTCGTCCTTATCCAACTTGAAAATCTACGCCGCGATAGGTATCATTTTTGCATGCGTGATTGCGGCTTCTGCTCTGATCTTCCTCTGTTTCCGCAGAAATCGCGGCTCGAGAAAGCACAAAATGCAGGTGAAGCACAGCTCCGGCTTGATTCCGTTGGTCTCGAAGGAGATCGCCGAGGTCAAAGAGCCGGATCAGGCGGCGGATTGCGAGAAAGGGGAAGCGGTTAGGGCTGAGATGAAGATGGAGATTGAGTTCGAGAGTGGAGCAGGGCAAAAGAGTCAAGAGAGCTACACGTCGGGCGGCGGCCGGAGCGACGTGTCGGTGGAGGATCCAAACTTAGGGTGGGGGCGCTGGTACAGCTTGAAGGAACTGGAAATGGCTACCGATGGATTTCCGGCCGGGAATGTCATCGGAGAAGGAGGCTACGGCATCGTGTACAGAGGCGTTTCGCCGGACGGCTCCGTCGTCGCCGTGAAGAATCTTCTTAACAATAAGGGTCAGGCAGAGAGAGAGTTCAAGGTTGAAGTAGAGGCCATTGGAAAAGTTAGGCACAAGAACTTGGTGGGTCTGGTAGGTTATTGTGCAGAAGGATCAGAGAGGATGCTTGTGTATGAATATGTTGAGAATGGCAACTTGGAGCAATGGCTGCATGGTGATGTGGGGCATGTGAGCCCTCTAACTTGGGATATTAGGATGAAGATTGCTCTTGGAACAGCAAAAGGCTTGGCCTATTTGCATGAGGGCTTAGAACCTAAAGTTGTGCACCGTGATGTAAAATCAAGCAACATTCTTTTAGATAGAAAATGGAATGCAAAGGTGTCTGACTTTGGACTTGCAAAGCTCCTACAACCTGAAGCCACCTACGTAACTACTCGTGTCATGGGCACGTTCGGATATGTCTCCCCTGAGTATGCAAGTACAGGTATGCTTAACGAGGGAAGCGACGTGTATAGTTTCGGGGTTCTACTTATGGAGATCATTACTGGTAGAAGCCCAATTGACTATTCTCGGCCCCCAGGAGAGATGAACTTGGTGGACTGGTTTAAAGGAATGGTGGCGAATCGACGTGGCGAAGAGGTTGTAGATCCATTGATTGAGATTCCACCCTCTCCAAGAACTCTAAAGCGAGTGTTGCTTGTTTGTCTACGCTGCATTGACTTGGATGCCAATAAAAGGCCAAAGATGGGGCAAATTGTTCATATGCTCGAGGCTGACGACTTTCCTTATCGTTCGGAGCTCCGATCTGTGCGAGAGAAAGACAACGAGCCTTCGCGTTTAGATGTGCCGAGTAAACTTCCACCAAAGCATGCTGGTATCGATGATATGGAATCTAGAAGGAGATAA 1413 49.82 MAVSGSNSTEILPSGESSSAPSHSSLSNLKIYAAIGIIFACVIAASALIFLCFRRNRGSRKHKMQVKHSSGLIPLVSKEIAEVKEPDQAADCEKGEAVRAEMKMEIEFESGAGQKSQESYTSGGGRSDVSVEDPNLGWGRWYSLKELEMATDGFPAGNVIGEGGYGIVYRGVSPDGSVVAVKNLLNNKGQAEREFKVEVEAIGKVRHKNLVGLVGYCAEGSERMLVYEYVENGNLEQWLHGDVGHVSPLTWDIRMKIALGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRKWNAKVSDFGLAKLLQPEATYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKGMVANRRGEEVVDPLIEIPPSPRTLKRVLLVCLRCIDLDANKRPKMGQIVHMLEADDFPYRSELRSVREKDNEPSRLDVPSKLPPKHAGIDDMESRRR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35671433 35675715 + Sed0025861.1 Sed05g2320 714946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2320 470 MobiDBLite consensus disorder prediction 1 24 - -
Sed05g2320 470 MobiDBLite consensus disorder prediction 436 470 - -
Sed05g2320 470 PANTHER OS01G0323000 PROTEIN 22 444 IPR052232 -
Sed05g2320 470 FunFam Probable serine/threonine-protein kinase At1g01540 134 229 - -
Sed05g2320 470 ProSiteProfiles Protein kinase domain profile. 154 433 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2320 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2320 470 SMART serkin_6 154 425 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2320 470 Pfam Protein tyrosine and serine/threonine kinase 158 425 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2320 470 SUPERFAMILY Protein kinase-like (PK-like) 137 432 IPR011009 -
Sed05g2320 470 FunFam Putative receptor-like serine/threonine-protein kinase 230 440 - -
Sed05g2320 470 CDD STKc_IRAK 160 426 - -
Sed05g2320 470 Gene3D Transferase(Phosphotransferase) domain 1 230 439 - -
Sed05g2320 470 Gene3D Phosphorylase Kinase; domain 1 128 229 - -
Sed05g2320 470 ProSitePatterns Protein kinases ATP-binding region signature. 160 182 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2320 Sed-Chr5:35671433 Sed10g1235 Sed-Chr10:26440288 9.50E-138 dispersed
Sed04g1581 Sed-Chr4:30600863 Sed05g2320 Sed-Chr5:35671433 1.30E-73 transposed
Sed04g3935 Sed-Chr4:47437172 Sed05g2320 Sed-Chr5:35671433 2.00E-161 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79209 PF07714 PK_Tyr_Ser-Thr 1.00E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2320 - - - 0.0