Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2322 ATGGCTCAGTCGTTTATGAAGAAGGATGACGACCGCGATGATGAAGGTGAGTATTCTCCGTTTTGGGGGATTGAGAAGGGTGCTGTTCTTCAGGAAGTTAGGGTTTTTAATGATCCTCACTTGGATCCAAGAAGATGCTCTCAGGTTATCACGAAGCTTCTATACCTTCTGAACCAGGGCGAAAACTTCACGAAGGTTGAAGCCACCGAAGTTTTCTTTGCTGTGACAAAGCTTTTCCAGTCAAGGGATATAGGGTTGAGAAGAATGGTGTATTTGATTATAAAGGAGCTGTCTCCATCTGCTGATGAGGTTATTATTGTGACTAGCTCCCTAATGAAGGACATGAATAGTAAGATTGATATGTATCGGGCAAATGCCATTCGTGTGCTTTGTCGGATTACTGATGGAACCCTCCTCACACAGATCGAGAGGTATCTAAAACAAGCAATTGTAGATAAGAACCCTGTGGTTGCCAGTGCTGCCTTAGTTAGTGGTATTCATTTTCTCCAGACAAACCCAGAAATTGTTAAGAGGTGGAGTAATGAGGTTCAGGAAGCTGTTCAGTCAAGGGCAGCACTTGTTCAATTTCATGCTCTTGCCTTGCTTCATCAAATACGCCAAAATGATCGTCTAGCTGTTAGCAAACTGGTTACTAGCCTAACAAGGGGTACTGTTCGGTCCCCGTTGGCTCAATGCCTCTTGATTCGCTATACCAGTCAGGTTATTCGTGAAACAGCTACCTGTACTCAAACTGGTGATCGACCGTTCTATGATTTTCTTGAGGGTTGTCTACGCCACAAAGCAGAGATGGTGATTTTTGAAGCTGTCAAAGCAATCATTGAGCTGCAGGGTGTGACAAGCAGAGAATTGACACCCGCTATTACTGTTCTTCAGCTGTTTTTAAGCTCCTCAAAACCAGTGCTGAGATTTGCTGCTGTTCGCACTTTGAATACGGTGGCAATGACTCATCCAATGGCTGTCACCAACTGCAATATTGATATGGAGAGCTTGATTTCTGATCAAAACAGGAGCATTGCAACTCTTGCTATAACCACACTTCTAAAAACAGGAAACGAATCAAGTGTGGACCGTCTAATGAAGCAGATAACAAATTTTGTGTCAGATATTGCAGATGAGTTTAAAATTGTTGTGGTAGAAGCGATTAGATCTCTGTGCTTGAAGTTCCCATTGAAATATAGATCTCTGATGAATTTTCTTAGCAACATTCTCAGAGAAGAAGGGGGCCTTGATTATAAAAAAGCTATTGTGGAGTCAATTGTGATTCTTATAAGAGATATTCCTGATGCTAAAGAGAGTGGGTTGCTTCATTTGTGTGAGTTTATTGAAGATTGTGAATTCACCTACCTTTCAACACAGATCCTTCACTTTCTGAGGATTGAAGGACCCAAAACCTCTGATCCTAGCAAATATATACGATACATATACAACCGAGTACATCTTGAAAATGCAACTGTACGTGCCAGTGCTGTGAGCACATTAGCAAGATTTGGTGTTACGGTTGAGTCGTTAAAGCCCCGAATATTAGTTCTGTTGAGACGATGTCTCTTTGACACTGATGATGAGGTTCGAGATAGGGCCACCCTATACTTAAAAACACTTGGAGGTGATGATGTAGTTACTGAAACTGAGAAGGATGCCCTTGACTTCCTTTTTGGGTCTTTGGAAGTCCCACTGATCAATCTAGAAACAAGTTTGAAGAATTATGAGCCGTCTGAGAAACCTTTTGACATTGATTCCGTTCCCAAGGAAATCAAGTCTCAGCAACATGCTGAGAAGAAAACCTCAGGTAAAAAACAAGCTGGCCTAGGTGCTCCTCCAAGTGGCCCTACAGCCACTGCTGATGCATATGAGAAGCAGCTATCCTCAATTCCAGAATTTGCAGACTTTGGGAAGCTTTTCAAGTCATCAGCACCTGTGGAGCTTTCAGAAGCAGAAACGGAATATGCAGCTAATGTTGTCAAGCATATTTTTGATAGCCACGTTGTGTTTCAATACAACTGCACGAATACAATTCCAGAGCAGCTACTTGAAAATGTCATTGTCATTGTCGATGCTTCTGAAGCAGAGGAATTCTCTGAAGTGATATCCAAGCCTCTCATATCACTTCCCTATAATTCACCTGGACAAACCTTCGTTGCATTTGAGATGCGGCAAGGGGCCTCTGCAGTTGGAAAATTTTCAAACACGTTGAGATTTATTGTTAAAGAGGTTGACCAAAGCACTGGTGAAGCAGAAGAAGTTGGTGTGGAGGATGAGTATCAGTTGGAAGATCTGGAGGTTGTTGCAGCTGATTACATGTTGAAAGAAGGAGTACCCAATTTTAAAAATGCCTGGGATAGCTTGGGTCAGGAATGTGTCGAGGAATACGGCCTTGGATCGAGGGAGAGCTTGGCCGAAGCTGTTGGTGCTGTCATAAATCTTCTCGGTATGCAGCCTTGTGAGGGCACTCAGGTTGTTGCAAGCAACTCAAGATCGCACTCCTGCCTACTATCTGGCATATTTATTATGAACGAAAGGGTACTTGCACGATTATCATTTGGAATCGATTCGTCAAGAGAGGTTGTAATGAGGCTGGCCGTTAAATCAACAGATGAAGTCGTTTGCGATATCATTCATGGTCTAGTTGCCAACGGCTAA 2658 42.74 MAQSFMKKDDDRDDEGEYSPFWGIEKGAVLQEVRVFNDPHLDPRRCSQVITKLLYLLNQGENFTKVEATEVFFAVTKLFQSRDIGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHFLQTNPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIRETATCTQTGDRPFYDFLEGCLRHKAEMVIFEAVKAIIELQGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNTVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFVSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGLDYKKAIVESIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLRIEGPKTSDPSKYIRYIYNRVHLENATVRASAVSTLARFGVTVESLKPRILVLLRRCLFDTDDEVRDRATLYLKTLGGDDVVTETEKDALDFLFGSLEVPLINLETSLKNYEPSEKPFDIDSVPKEIKSQQHAEKKTSGKKQAGLGAPPSGPTATADAYEKQLSSIPEFADFGKLFKSSAPVELSEAETEYAANVVKHIFDSHVVFQYNCTNTIPEQLLENVIVIVDASEAEEFSEVISKPLISLPYNSPGQTFVAFEMRQGASAVGKFSNTLRFIVKEVDQSTGEAEEVGVEDEYQLEDLEVVAADYMLKEGVPNFKNAWDSLGQECVEEYGLGSRESLAEAVGAVINLLGMQPCEGTQVVASNSRSHSCLLSGIFIMNERVLARLSFGIDSSREVVMRLAVKSTDEVVCDIIHGLVANG 885
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35684395 35701112 - Sed0018667.1 Sed05g2322 714948

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2322 885 FunFam Coatomer subunit gamma 615 768 - -
Sed05g2322 885 MobiDBLite consensus disorder prediction 579 603 - -
Sed05g2322 885 FunFam Coatomer subunit gamma 333 541 - -
Sed05g2322 885 Pfam Adaptin N terminal region 28 540 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Sed05g2322 885 PIRSF Gamma-COP 6 883 IPR017106 -
Sed05g2322 885 FunFam Coatomer subunit gamma 23 316 - -
Sed05g2322 885 PANTHER COATOMER SUBUNIT GAMMA 1 882 IPR017106 GO:0000139(PANTHER)|GO:0005783(PANTHER)|GO:0005793(PANTHER)|GO:0006888(PANTHER)|GO:0006891(PANTHER)|GO:0009306(PANTHER)|GO:0030126(PANTHER)
Sed05g2322 885 Gene3D - 769 883 IPR012295 -
Sed05g2322 885 MobiDBLite consensus disorder prediction 579 619 - -
Sed05g2322 885 Gene3D - 333 555 IPR011989 -
Sed05g2322 885 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 882 IPR009028 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Sed05g2322 885 Gene3D - 23 316 IPR011989 -
Sed05g2322 885 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 881 IPR032154 -
Sed05g2322 885 FunFam Coatomer subunit gamma 769 883 - -
Sed05g2322 885 Gene3D Coatomer, gamma subunit, appendage domain 616 768 IPR037067 GO:0005198(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030126(InterPro)
Sed05g2322 885 SUPERFAMILY ARM repeat 21 580 IPR016024 -
Sed05g2322 885 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198(InterPro)|GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030126(InterPro)
Sed05g2322 885 SUPERFAMILY Clathrin adaptor appendage domain 617 771 IPR013041 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2322 K17267 - - csv:101218494 1551.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2322 Sed-Chr5:35684395 Sed05g3628 Sed-Chr5:44585576 0.00E+00 dispersed
Sed01g0309 Sed-Chr1:2362972 Sed05g2322 Sed-Chr5:35684395 0.00E+00 wgd
Sed04g3937 Sed-Chr4:47455470 Sed05g2322 Sed-Chr5:35684395 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g582 Blo02g00800 . . Bda08g00925 . Bpe12g00078 . . Cmo19g00674 . Cma02g00404 . Car02g00264 Car20g00739 Sed05g2322 Cpe04g00125 Cpe15g00534 Bhi05g01224 Tan02g0807 Cmetu01g1965 . Hepe02g0514 . . Cla02g00528 Cam02g0546 Cec02g0547 Cco02g0553 Clacu02g0547 Cmu02g0542 Cre02g0873 Cone12ag1147 Cone8ag1195 Cone3ag1158 . Lsi10g00358 . Chy11g00388 Cme01g01429 Blo04g00508 Blo13g00555 . Bda14g00549 Bpe15g00871 . . . Sed01g0309 Cmo02g00409 Cmo20g00865 . Cma19g00660 . Car19g00503 . Cpe05g01253 Bhi10g02020 Tan05g1319 Cmetu11g0171 . Hepe08g1023 . . . . . . . . . Lsi11g01096 Csa02g01249 Chy01g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001661 4 2 3 0 2 2 3 2 2 2 2 2 3 2 2 4 2 3 4 2 2 2 2 2 2 2 2 4 3 1 70