Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2352 ATGGGAGCTGAAACTGGGCTTGCAATGTTTTGTGGAATTCTTCATAAAATAAAACCCTACTTGGCTATGGTTTCCCTTCAATTTGGGTATGCTGGGATGTATATTATCACCATGTTATGTTTTAAGAAGGGCATGAACCATTACGTTCTTGCAGTCTATCGACACGCCGTTGCTACCATTGTTATTTCTCCTTTCGCTCTCATCCTCGAAAGGAAAATAAGGCCGAAGATGACGTTTCCCATCCTTATTCGAGTATTGCTCCTCGGCTTTCTCGAGCCAGTATTGGATCAAAATCTATACTACGTGGGGTTGAAGCTTACCTCAGCAACATTCACATCTGTCACTCTCAATATTCTCCCTGCAGTAACTTTCATTATGGCTCTCATTTTCAGGTTGGAAAGGGTAAACTTTAAGAAGGTTCGTAGCATCGCAAAGGTGGTTGGAACATTGGTGACAATCGGGGGAGCAATGGTGATGACTCTATATAAAGGACCGATCGTCGAAATCTTCCACGCCCATGCGCAACGTGCTGCCGAGCACACCAGCAGCGAGTCGGCCGACAAACATTGGGTAGTTGGCACCCTCATGCTCCTTGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACATTGAAGAAGTACCCGGCAGAGTTATCGTTGACGGCCTTGATATGCATTGCCGGCACGGTGGAGGGCTCTATTGTGACATTGATTATGGAGCGTGACTTTAGCGTGTGGGTCATTGGTTGGGACTCTCGTCTTCTTGCTGCTGTTTATACAGGTGTGGTATGCTCTGGATTTGCTTATTATATTCAAGGTGTGGTAATTCGCGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTCCATCGTTTTGGCTGAGCAAATTCACCTTGGAAGCGTAATAGGAGCAGTTTTTATTGTGATGGGGCTATACTTAGTGGTCTGGGGCAAAGCCAAGGATCATCTAAACAAATTAGCCAGTCCTAAAGGCGGCGCCGCCACTGAATTACCGTTAACCACCGAGCCGGAGACCACCGCCGCCACCAACGAGCGTTGCTCTTCCAAGCTTCCACCGGCATAA 1128 47.43 MGAETGLAMFCGILHKIKPYLAMVSLQFGYAGMYIITMLCFKKGMNHYVLAVYRHAVATIVISPFALILERKIRPKMTFPILIRVLLLGFLEPVLDQNLYYVGLKLTSATFTSVTLNILPAVTFIMALIFRLERVNFKKVRSIAKVVGTLVTIGGAMVMTLYKGPIVEIFHAHAQRAAEHTSSESADKHWVVGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICIAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVVCSGFAYYIQGVVIRERGPVFVTSFTPLCMIITAFLGSIVLAEQIHLGSVIGAVFIVMGLYLVVWGKAKDHLNKLASPKGGAATELPLTTEPETTAATNERCSSKLPPA 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 35994836 35999014 - Sed0026315.1 Sed05g2352 714978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2352 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 254 334 - -
Sed05g2352 375 Pfam EamA-like transporter family 32 149 IPR000620 GO:0016020(InterPro)
Sed05g2352 375 Pfam EamA-like transporter family 193 330 IPR000620 GO:0016020(InterPro)
Sed05g2352 375 MobiDBLite consensus disorder prediction 354 368 - -
Sed05g2352 375 MobiDBLite consensus disorder prediction 346 375 - -
Sed05g2352 375 PANTHER WAT1-RELATED PROTEIN 21 343 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed05g2352 375 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3128 Sed-Chr1:43824645 Sed05g2352 Sed-Chr5:35994836 1.10E-76 dispersed
Sed03g0798 Sed-Chr3:4809533 Sed05g2352 Sed-Chr5:35994836 1.70E-86 dispersed
Sed05g2352 Sed-Chr5:35994836 Sed12g1459 Sed-Chr12:14680027 3.60E-180 dispersed
Sed05g2352 Sed-Chr5:35994836 Sed14g0458 Sed-Chr14:4628729 1.30E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2352 - - - 0.0