Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g2352 | ATGGGAGCTGAAACTGGGCTTGCAATGTTTTGTGGAATTCTTCATAAAATAAAACCCTACTTGGCTATGGTTTCCCTTCAATTTGGGTATGCTGGGATGTATATTATCACCATGTTATGTTTTAAGAAGGGCATGAACCATTACGTTCTTGCAGTCTATCGACACGCCGTTGCTACCATTGTTATTTCTCCTTTCGCTCTCATCCTCGAAAGGAAAATAAGGCCGAAGATGACGTTTCCCATCCTTATTCGAGTATTGCTCCTCGGCTTTCTCGAGCCAGTATTGGATCAAAATCTATACTACGTGGGGTTGAAGCTTACCTCAGCAACATTCACATCTGTCACTCTCAATATTCTCCCTGCAGTAACTTTCATTATGGCTCTCATTTTCAGGTTGGAAAGGGTAAACTTTAAGAAGGTTCGTAGCATCGCAAAGGTGGTTGGAACATTGGTGACAATCGGGGGAGCAATGGTGATGACTCTATATAAAGGACCGATCGTCGAAATCTTCCACGCCCATGCGCAACGTGCTGCCGAGCACACCAGCAGCGAGTCGGCCGACAAACATTGGGTAGTTGGCACCCTCATGCTCCTTGGCAGCATCGTCGGCTGGTCCGGCTTCTTCATCTTGCAATCGTTCACATTGAAGAAGTACCCGGCAGAGTTATCGTTGACGGCCTTGATATGCATTGCCGGCACGGTGGAGGGCTCTATTGTGACATTGATTATGGAGCGTGACTTTAGCGTGTGGGTCATTGGTTGGGACTCTCGTCTTCTTGCTGCTGTTTATACAGGTGTGGTATGCTCTGGATTTGCTTATTATATTCAAGGTGTGGTAATTCGCGAACGTGGCCCAGTTTTTGTTACCTCTTTTACCCCTCTCTGCATGATTATTACTGCCTTCCTTGGCTCCATCGTTTTGGCTGAGCAAATTCACCTTGGAAGCGTAATAGGAGCAGTTTTTATTGTGATGGGGCTATACTTAGTGGTCTGGGGCAAAGCCAAGGATCATCTAAACAAATTAGCCAGTCCTAAAGGCGGCGCCGCCACTGAATTACCGTTAACCACCGAGCCGGAGACCACCGCCGCCACCAACGAGCGTTGCTCTTCCAAGCTTCCACCGGCATAA | 1128 | 47.43 | MGAETGLAMFCGILHKIKPYLAMVSLQFGYAGMYIITMLCFKKGMNHYVLAVYRHAVATIVISPFALILERKIRPKMTFPILIRVLLLGFLEPVLDQNLYYVGLKLTSATFTSVTLNILPAVTFIMALIFRLERVNFKKVRSIAKVVGTLVTIGGAMVMTLYKGPIVEIFHAHAQRAAEHTSSESADKHWVVGTLMLLGSIVGWSGFFILQSFTLKKYPAELSLTALICIAGTVEGSIVTLIMERDFSVWVIGWDSRLLAAVYTGVVCSGFAYYIQGVVIRERGPVFVTSFTPLCMIITAFLGSIVLAEQIHLGSVIGAVFIVMGLYLVVWGKAKDHLNKLASPKGGAATELPLTTEPETTAATNERCSSKLPPA | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 35994836 | 35999014 | - | Sed0026315.1 | Sed05g2352 | 714978 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g2352 | 375 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 254 | 334 | - | - | |
Sed05g2352 | 375 | Pfam | EamA-like transporter family | 32 | 149 | IPR000620 | GO:0016020(InterPro) | |
Sed05g2352 | 375 | Pfam | EamA-like transporter family | 193 | 330 | IPR000620 | GO:0016020(InterPro) | |
Sed05g2352 | 375 | MobiDBLite | consensus disorder prediction | 354 | 368 | - | - | |
Sed05g2352 | 375 | MobiDBLite | consensus disorder prediction | 346 | 375 | - | - | |
Sed05g2352 | 375 | PANTHER | WAT1-RELATED PROTEIN | 21 | 343 | IPR030184 | GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
Sed05g2352 | 375 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 53 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3128 | Sed-Chr1:43824645 | Sed05g2352 | Sed-Chr5:35994836 | 1.10E-76 | dispersed | |
Sed03g0798 | Sed-Chr3:4809533 | Sed05g2352 | Sed-Chr5:35994836 | 1.70E-86 | dispersed | |
Sed05g2352 | Sed-Chr5:35994836 | Sed12g1459 | Sed-Chr12:14680027 | 3.60E-180 | dispersed | |
Sed05g2352 | Sed-Chr5:35994836 | Sed14g0458 | Sed-Chr14:4628729 | 1.30E-97 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g2352 | - | - | - | 0.0 |