Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2359 ATGGAAGGTCAGAAGAGTCAGTTGAAGCTCACGAGAACTCAGTCGTCGTTACTCCGTTCGTCGCCGACTTTCCGATCGTCCGTCACCGAGGGGGACGTTATCGCCGGCCATCAGGAGGATGACGATGAAGAGAAGCGGAGGCCTAAGAAGCCTCGTAGGTCCGGTTCGTATCCGAGAACCGGATCGAACCGATTTGCGAGCCGTGTTCTTGCTATGGCTTTGATTCTTTGCTTTAGTTTCTTCTCGTTGCTCTTTGCGTTCTTCTTTCTGAGGATGGATGGACTACTCCCGTCCGAGAATCTGTTGTTGGCTCTGATTTTTGTTGCTGTTACGCTTGTGTTTGTGAGCAAGAATAAGGAGTTAATCTTACGGATTCTTTGTTCTATGAAGCATTCATGGCATGGATTCTGTTTCTCGAGATCAGATTCGACTCCGATCCAGTGGTACATTGGGGAATCGAACGGAGACGAAGACGACGAGGCTCGGAAAGAGGGAGAAATCATCAGAGATGGCGTAGAATGCTATAGCAATGGCGATTTCTACGAGGGAGAGTTTCGGAATGGGAGTTGTAATGGAAGTGGGGTTTACAACTATTTCCAAAGTGGAAGATACGAAGGGGATTGGGTCGATGGGAGATACGATGGCTATGGCGTCGAGAGCTGGGCGAAGGGGAGTCGGTACCGGGGCCAATATCGACAAGGTCTTAGACATGGATTTGGTGTGTATAAGTTCTACACGGGGGATTCCTATGCTGGTGAGTGGTGTAATGGCCAAAGCCATGGCGTTGGGTTTCAAACTTGCGCTGATGGTAGCTGCTATGTTGGTGAATTCAAGCGCGGCGTTAAGCATGGTCTTGGATGTTACTATTTCAGGTATATTTTTGCAATTATTGAGGCATTTCAATCGTTTTGGTTTGTTTTTGAGCTCTAA 930 48.06 MEGQKSQLKLTRTQSSLLRSSPTFRSSVTEGDVIAGHQEDDDEEKRRPKKPRRSGSYPRTGSNRFASRVLAMALILCFSFFSLLFAFFFLRMDGLLPSENLLLALIFVAVTLVFVSKNKELILRILCSMKHSWHGFCFSRSDSTPIQWYIGESNGDEDDEARKEGEIIRDGVECYSNGDFYEGEFRNGSCNGSGVYNYFQSGRYEGDWVDGRYDGYGVESWAKGSRYRGQYRQGLRHGFGVYKFYTGDSYAGEWCNGQSHGVGFQTCADGSCYVGEFKRGVKHGLGCYYFRYIFAIIEAFQSFWFVFEL 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36099403 36102045 - Sed0001675.2 Sed05g2359 714985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2359 309 Pfam MORN repeat 227 248 IPR003409 -
Sed05g2359 309 Pfam MORN repeat 273 290 IPR003409 -
Sed05g2359 309 Pfam MORN repeat 250 271 IPR003409 -
Sed05g2359 309 Pfam MORN repeat 181 198 IPR003409 -
Sed05g2359 309 Pfam MORN repeat 204 226 IPR003409 -
Sed05g2359 309 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 175 290 - -
Sed05g2359 309 SMART morn 271 292 IPR003409 -
Sed05g2359 309 SMART morn 179 200 IPR003409 -
Sed05g2359 309 SMART morn 202 223 IPR003409 -
Sed05g2359 309 SMART morn 225 246 IPR003409 -
Sed05g2359 309 SMART morn 248 269 IPR003409 -
Sed05g2359 309 MobiDBLite consensus disorder prediction 1 59 - -
Sed05g2359 309 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 124 290 - -
Sed05g2359 309 Gene3D - 256 292 - -
Sed05g2359 309 Gene3D - 211 255 - -
Sed05g2359 309 Gene3D - 162 210 - -
Sed05g2359 309 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 256 293 - -
Sed05g2359 309 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 164 209 - -
Sed05g2359 309 MobiDBLite consensus disorder prediction 34 50 - -
Sed05g2359 309 MobiDBLite consensus disorder prediction 1 28 - -
Sed05g2359 309 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 210 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2359 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2359 Sed-Chr5:36099403 Sed09g0159 Sed-Chr9:1236324 9.00E-12 dispersed
Sed05g2358 Sed-Chr5:36099403 Sed05g2359 Sed-Chr5:36099403 5.70E-110 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68