Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2367 ATGTCGGAATCGGAGACTGAGACGGAGATGGAGACGGAGGTATTCGACGCGGCGGCGCTGGTGAAGGAGCTGCGAGGAAGTTTTGCCTCCTGCAAGACTCGGAGCTACGAGTGGCGAGTGTCGCAGCTTGAGAATCTCTGGAACCTCTGCGTTGACCACGAGGAAGAAATCTGCGATGCGCTTTACTCCGATCTCTCCAAGCCTATGACGGAGGCCTACCTTCACGAGATATCTATGTTAAAAGGTTCGTGTAAATTGGCACTAAAAGAACTTCATCGTTGGATGGCACCAGAAAAGGTTAAAACTTCAATTACTACATTTCCTTCGTCTGCTGCAATTGTACCAGAACCATTGGGTGTTGTCTTGATCATTTCTGCTTGGAATTATCCATTCTTATTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGCAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAGCAACATCATCTTTAATGGCAAAACTCTTGGGGAAATATTTGGATAATTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTTCTGAAACATCTGCTTTGCTTGAGCAAAAGTGGGACAAAATATTTTACACGGGCAATGGAAGAGTGGGGCGTATAGTGATGGCAGCTGCTGCCAAGCACCTTACACCAGTTGTTTTAGAGCTTGGAGGAAAATCTCCAGTGGTAGTTGATTCAGGAATTAACTTACAAGTTGCGTGTAGGCGGATTATTGTTGGTAAGTGGGGTTGTAACAATGGACAAGCGTGCATTGCTCCTGATTATATCATAACTACTAAAGAATTTGCTCCAAAATTGGTGGAGACTCTGAAAAAAGAACTGGAGAGATTTTATGGAAAGAACCCAATGGAAACAAAAGATTTGTCTCGTATTGTGAATGCTAGCCACTTTGCTCGCTTGTCAAAGCTCTTAGATGATGATAAAGTTTCTGGCAAGATTGTACATGGAGGTGAAAGGGACAAAACCAAATTACAGATCACTCCGACCCTTTTATTGGACGTCCCTCAAGATTCTCTGATTATGACGGAGGAGATCTTTGGTCCCTTACTTCCTATTATCACGGTTGACAAAGTGGAGGACAGCTTCGAAGTAGTGAGATCGGGCACAAAGCCACTTGCGGCATATTTATTTACGAACAACAAGAAACTCAAGGAACAGTTCGTGGCCTCTATCCCTGCAGGGGGCATGGTCATCAATGATACCACCATACATCTGGCAGTTAGCACTCTACCGTTCGGAGGAGTTGGGGAGAGTGGAATGGGGACTTACCATGGGAAGTTCTCTTTTGATGCATTTAGCCATAAGAAGGGCGTTCTTTATCGAAGCTTTGCAGGCGATGCATCGATGAGATACCCGCCGTACAGTCAGGGAAAGCTGAGAGTTCTCAAGGCTCTTCTTGGAGGTGACATATGGGGACTCATTCGTGCTCTTATTGGATGGCCATAA 1470 45.1 MSESETETEMETEVFDAAALVKELRGSFASCKTRSYEWRVSQLENLWNLCVDHEEEICDALYSDLSKPMTEAYLHEISMLKGSCKLALKELHRWMAPEKVKTSITTFPSSAAIVPEPLGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPATSSLMAKLLGKYLDNSAVKVVEGAVSETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSGINLQVACRRIIVGKWGCNNGQACIAPDYIITTKEFAPKLVETLKKELERFYGKNPMETKDLSRIVNASHFARLSKLLDDDKVSGKIVHGGERDKTKLQITPTLLLDVPQDSLIMTEEIFGPLLPIITVDKVEDSFEVVRSGTKPLAAYLFTNNKKLKEQFVASIPAGGMVINDTTIHLAVSTLPFGGVGESGMGTYHGKFSFDAFSHKKGVLYRSFAGDASMRYPPYSQGKLRVLKALLGGDIWGLIRALIGWP 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36139360 36144846 + Sed0016349.1 Sed05g2367 714993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2367 489 PIRSF ALDH 2 483 IPR012394 GO:0006081(InterPro)
Sed05g2367 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 226 426 IPR016163 GO:0016620(InterPro)
Sed05g2367 489 FunFam Aldehyde dehydrogenase 25 230 - -
Sed05g2367 489 CDD ALDH_F3FHI 17 448 - -
Sed05g2367 489 PANTHER ALDEHYDE DEHYDROGENASE 17 486 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Sed05g2367 489 SUPERFAMILY ALDH-like 16 460 IPR016161 GO:0016491(InterPro)
Sed05g2367 489 Pfam Aldehyde dehydrogenase family 16 444 IPR015590 GO:0016491(InterPro)
Sed05g2367 489 FunFam Aldehyde dehydrogenase 226 426 - -
Sed05g2367 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 26 444 IPR016162 GO:0016491(InterPro)
Sed05g2367 489 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 222 229 IPR029510 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1142 Sed-Chr5:11860219 Sed05g2367 Sed-Chr5:36139360 8.30E-129 dispersed
Sed05g2367 Sed-Chr5:36139360 Sed06g1004 Sed-Chr6:14802316 4.20E-229 dispersed
Sed05g2367 Sed-Chr5:36139360 Sed05g2368 Sed-Chr5:36139360 9.40E-189 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2367 K00128 - csv:101219569 786.563