Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2398 ATGGCGGCAATGGTCGGAGGCGGCGGCGCTAGCGGAGGCGCTTTCATGGTCGGCGGCGGAGATGTGTCGAACGCGCACAAGGCTATGGCGCTGGTGCAAGTCATCAATGGAGGTTATCATGTTATCACCAAAGTCGCTCTCAATGTCGGGATGAACCAGGTCGTGTTTTGTTTGTTTCGCGACTTGTTGGCGCTCGCGATTCTTGCTCCTGTTGCTTATCTTCGTGAGAAGCGGGTTCGTTTGCCTATGACTCGGGACCTTCTCATATCATTCTTTGTTCTTGGTTTAACAGGGATTTTTGGTAATCAGCTTCTCTTTCTTGTTGGACTTGGCTACACTAATCCAACTTATGCTGCTGCCATACAACCTTCCATTCCGGTTTTTACATTCCTTTTTGCAGTTATGATGGGCACAGAGACTGTGAACTTTCTCAAACCGGAAGGACAGGCAAAGATTGGAGGTACGCTCGTTTGTGTTTCCGGTGCCATTTTGATGATTTTGTTCCGTGGCCCAGCTCTGGTTGGAAACAGTGAATCCGACTTGTCACATGGCGAAATAAGTGCAAGGGGTCAGCCAGAGCCAGCTGGATGGCTAATGTCTAGCTTATTAGAGTATGGAATGGATCATTTTCATATCGGGGTTTTATGCTTGATAGGGAACTGTATGTGCATGGCCGCTTTCTTGGCTATCCAGGCACGGGTGTTAAAGAAGTATCCCTCCAACTTGTCGGTCACAGCCTATTCTTATTTATTTGGTGTTCTATTGATGGTGACCACATCTTTTTTCATGACCACCGAAACCACAGACTGGAATTTAACGAAATCAGAGTTTTTTGCTGTCCTTTATGGTGGAATTTTTGCATCTGCCATCAATTATGGACTCTTGACATGGTGCAATAAAATTTTAGGGCCTGCACTGGTGGCTCTTTACAACCCACTTCAACCTGCACTGTCTGCGGTGTTGTCAAGAGTTTTCCTAGGAAGCCCTATTTATCTTGGAAGTGTTTTGGGGGGAATTCTTATTATTGCTGGTCTATATTTGGTTACTTGGGCGTCGCATAGGGAACGACAAACAACTACAGTTATGTTACTTCATTCATCCAAATCTTCCGAACCACTTATTCACAAAGATATATTGACTAACAAGATTGCATATCAGATAGGACACATTTTCTCAGGGCCTGCCTCATCACCCAAATCTGTAGATTAA 1209 45.24 MAAMVGGGGASGGAFMVGGGDVSNAHKAMALVQVINGGYHVITKVALNVGMNQVVFCLFRDLLALAILAPVAYLREKRVRLPMTRDLLISFFVLGLTGIFGNQLLFLVGLGYTNPTYAAAIQPSIPVFTFLFAVMMGTETVNFLKPEGQAKIGGTLVCVSGAILMILFRGPALVGNSESDLSHGEISARGQPEPAGWLMSSLLEYGMDHFHIGVLCLIGNCMCMAAFLAIQARVLKKYPSNLSVTAYSYLFGVLLMVTTSFFMTTETTDWNLTKSEFFAVLYGGIFASAINYGLLTWCNKILGPALVALYNPLQPALSAVLSRVFLGSPIYLGSVLGGILIIAGLYLVTWASHRERQTTTVMLLHSSKSSEPLIHKDILTNKIAYQIGHIFSGPASSPKSVD 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36380631 36386150 + Sed0023900.1 Sed05g2398 715024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2398 402 Pfam EamA-like transporter family 29 147 IPR000620 GO:0016020(InterPro)
Sed05g2398 402 Pfam EamA-like transporter family 212 349 IPR000620 GO:0016020(InterPro)
Sed05g2398 402 PANTHER WAT1-RELATED PROTEIN 28 364 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed05g2398 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 169 - -
Sed05g2398 402 SUPERFAMILY Multidrug resistance efflux transporter EmrE 251 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2398 Sed-Chr5:36380631 Sed08g0381 Sed-Chr8:2303753 1.70E-58 dispersed
Sed05g2398 Sed-Chr5:36380631 Sed11g1065 Sed-Chr11:26042393 9.80E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2398 - - - 0.0