Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2402 ATGCTGAAGCCGAAGCCATTCGCCGGAGCAAACGTGTTCGTGTCCCGCAATCTTGTTGCTCCGGAGATATTCGACGCTCTTCACGACGCTCTGAAGCAGAATGGGGCTGAGACCTTTCTCTGCTGCGATCCTTCTCGAAACGACCGTAATGATTATCATGTTATCTCCTCCGCCGATCACGAAAAGTTCGAGGATCTTCGCGCCAAGGGGTGCAATTTGCTAGGTCCACAGTGCGTGCTTTCATGTGCAAAGGAGTGCAGGCCCCTTCCTCAACAGGGTTTTACTTGCTGCCTTGCTTTGGATGGTGTTAAAATTTTGGCATCTGGTTTTCAGGGGGACGAAAAGGCTGAGATAGGGAAATTAGTAACTGCAATGGGAGGAGTATTGCATACGAAAGCATCTCTAGATGTCACCTTTGTCATCGTGAAGAATGTTTTGTCTGCAAAATACAAGTGGGCGCTAAACATTTCAAAGAAACCAATTGTCACAATCGCTTGGTTACAACAGTGCTGGATTGAACATCGTGTAGTGCCTCAAGAGGGATATCGAGTCCTTCCATTTTCTGGATTGATTATTTCGGTATCTAGAATTCCAGCAGATGAGCGCAAGGAGATTGAAAGACTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTTACAAGAAAGTGTACACATTTGATATCTCCTGAAGGTGACAAGTACAAGGTTGCACGAACATGGGGCCATATCAGTATCGTTACTCGGAAATGGTTTGATCAATCCATAGCTAAAAAAGCATGTCTTAATGAGGAGTCCTACCCTGTTGGTATCATTTCTGGAACGTCAAATAAAATGGCAAGGGGTTGCTTGACTGCTCACAATAGCCAAGAAAAGGCTATTGGTAACTTGCAAGCTGCGCCTTCCTCCTTTATTGCTGATTCAAATTTCTCAGCAGTTTCTGGCCCTGGGTTTTCAGATATGGATTTAGAAGCTACTCTTTCACAGAGCACATCTATGTTTTCAGATGCTTCTCATTTTATAAATGAGGTTGACCTTGCAGTGCCAGTTACTATGGAAAAGAATGAAGCAAACACTGATAATTGTGTTGCAAATGACTTCCAGTCTGAAGACAATGACCTATATTTGTCAGAATGTAGAATAAAAGTTGTCGGGTTTGAATCTTCTGAGATGCGCAAGATTGTGAATATGATTCGCAAAGGAGGAGGCTCTAGATACATGCTGTTCAATGACAAGCTAACACACATAATAGTTGGAAATCCGTCAGAAATGGAGAAAAAGGAGGTAAGAGATATTGCAGCTTCAGGTGTCATCCATGTGGTTAGAACCGCCTGGCTTGAGGATTGTGATCGTCAGAAGAAGGAGATCCCTGTTTTTGGCAGACATATGGCCTATGATGAACTTATTCCTAAAGTTTTGATATCATCCAGTAAATCAAGCACCATTGTTATGGATCAGAATAGAGTTCCTAATGTTCATCCAGTCATGCCATCGAATGGATCAGAAGGAAATATTCATGCTAGAGTTGGAAAGACATCAATGACAGAGGAAAAAGTTCAAGAAAAGAGTGAAGCAAATGTGAGTGGAGACAGGACCATGAAATTATCCCAGAAAAGCCAACCTTCTGTAGCAAATGGTGCAACCAAGAGTCAGGAAAAGATGCGTCGTGATTTCACTGTTCCAAATGGGAAATCATCTTATGTGTTCAAGGGGAAAATATTTTGCTTTTCTAGTTCCTTTCCAGATGATCGGAGAGCTGAAATTGTTGAATGGATAAATCAAGGTGGAGGGGAGGTTGTTGAGGATTATATGAAACAGAAAGTGCACTTCACTGTTGAATCTCATGGGGAGACACCAAGGAGTACAGATGTTCATACTACATATGTGTCAAGTCATTGGGTCCGATCATGTTTAGAGGATGGATGCTTGTGGGATACCAATGGCCACATTCTCTATTTTCCACTTCCTTGCCGTGTCCCTTTGCCTGGGTTTAAAAACATTCGGTTCTGTGTTTCACAATATGAAGATAAAGACAGAGTACTGTTAAGAAATCTGTGTTTTGTACTCGGGGCCAAGTTTGTGGAGAAGTTGACAAAGAAGGTAACCCATCTAATATGCAAGTTTTCCGAAGGGCCAAAGTATGAGGCTGCCTGTAAATGGGGAATACATTCAATTACAGCTGAATGGATATATGAGTGCGTCAGACAGAATGCGATTGTTTCTCTTGATTTGTATCGTCCAAAAGAAGTTACAGCTCAAGACAGAGAGGCTGGCTTATGCACTGTAAGTCAGTTTCCTACAGAAGCTGTCCAAACGATAGGCGGTGAAAGTCAATCCCAGTTCCCTAACCATTCTGCAATCCTGAGAGACCAATCAGTTGGAACTAACAGCAGCTCAATAGGAGAAGTTGATCAATTAAGTTTTACTAATAAAAAGCGAAAGTTTTTTAACGAAGCTACACAAAAGCGTACACTTTTTGGTGGAAGCAATCTCACTCATTTCGACTGCAATTTGAGCTCCTCCAGAGAAACGGCATCAAAATCTTCTGTAGGAACTTCACATGCTCCTGATGTTGCTGCCGCAATCGAAGACTTGCTGGAGCAGACAACTAAGATTCATGATCAGAAGTCGCCGGGAAAGACTAGCTGTGACAGAAGTATTTTCCCGCCTGAGTGTTCCGTCATTGGTAAAGACCATTCAGAAGCTCATCCAATTAGTGGTTTATCTACCCAGTGGTTAAAAAGAGGTGAAAGAAAAGAAGACGCCAGCAATCCTAGTGCTGCAAATGGGAGTGCAGGCATATATGATGGTTTTAGTGAAACACAAACCGAGTCTCAGGTTGTGGGTTATGAAGAGGATTTGTCAGGAAGGCAAATGCTTATAGACAGAGTTCGAACCCGTAGCAGCATGACTTGA 2916 42.56 MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAETFLCCDPSRNDRNDYHVISSADHEKFEDLRAKGCNLLGPQCVLSCAKECRPLPQQGFTCCLALDGVKILASGFQGDEKAEIGKLVTAMGGVLHTKASLDVTFVIVKNVLSAKYKWALNISKKPIVTIAWLQQCWIEHRVVPQEGYRVLPFSGLIISVSRIPADERKEIERLILQNGGRYSADLTRKCTHLISPEGDKYKVARTWGHISIVTRKWFDQSIAKKACLNEESYPVGIISGTSNKMARGCLTAHNSQEKAIGNLQAAPSSFIADSNFSAVSGPGFSDMDLEATLSQSTSMFSDASHFINEVDLAVPVTMEKNEANTDNCVANDFQSEDNDLYLSECRIKVVGFESSEMRKIVNMIRKGGGSRYMLFNDKLTHIIVGNPSEMEKKEVRDIAASGVIHVVRTAWLEDCDRQKKEIPVFGRHMAYDELIPKVLISSSKSSTIVMDQNRVPNVHPVMPSNGSEGNIHARVGKTSMTEEKVQEKSEANVSGDRTMKLSQKSQPSVANGATKSQEKMRRDFTVPNGKSSYVFKGKIFCFSSSFPDDRRAEIVEWINQGGGEVVEDYMKQKVHFTVESHGETPRSTDVHTTYVSSHWVRSCLEDGCLWDTNGHILYFPLPCRVPLPGFKNIRFCVSQYEDKDRVLLRNLCFVLGAKFVEKLTKKVTHLICKFSEGPKYEAACKWGIHSITAEWIYECVRQNAIVSLDLYRPKEVTAQDREAGLCTVSQFPTEAVQTIGGESQSQFPNHSAILRDQSVGTNSSSIGEVDQLSFTNKKRKFFNEATQKRTLFGGSNLTHFDCNLSSSRETASKSSVGTSHAPDVAAAIEDLLEQTTKIHDQKSPGKTSCDRSIFPPECSVIGKDHSEAHPISGLSTQWLKRGERKEDASNPSAANGSAGIYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMT 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36403609 36411818 + Sed0010713.1 Sed05g2402 715028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2402 971 Gene3D BRCT domain 662 754 IPR036420 -
Sed05g2402 971 ProSiteProfiles BRCT domain profile. 182 269 IPR001357 -
Sed05g2402 971 CDD BRCT_TopBP1_rpt2_like 662 737 - -
Sed05g2402 971 Gene3D BRCT domain 561 657 IPR036420 -
Sed05g2402 971 MobiDBLite consensus disorder prediction 529 549 - -
Sed05g2402 971 SMART BRCT_7 4 86 IPR001357 -
Sed05g2402 971 SMART BRCT_7 373 453 IPR001357 -
Sed05g2402 971 SMART BRCT_7 566 641 IPR001357 -
Sed05g2402 971 SMART BRCT_7 661 737 IPR001357 -
Sed05g2402 971 SMART BRCT_7 97 174 IPR001357 -
Sed05g2402 971 SMART BRCT_7 184 259 IPR001357 -
Sed05g2402 971 FunFam Transcription coactivator 353 463 - -
Sed05g2402 971 SUPERFAMILY BRCT domain 568 652 IPR036420 -
Sed05g2402 971 Gene3D BRCT domain 24 94 IPR036420 -
Sed05g2402 971 Gene3D BRCT domain 351 459 IPR036420 -
Sed05g2402 971 SUPERFAMILY BRCT domain 57 184 IPR036420 -
Sed05g2402 971 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 23 969 - GO:0006270(PANTHER)|GO:0007095(PANTHER)|GO:0033314(PANTHER)
Sed05g2402 971 CDD BRCT 103 170 - -
Sed05g2402 971 Gene3D BRCT domain 186 269 IPR036420 -
Sed05g2402 971 Pfam twin BRCT domain 668 729 IPR001357 -
Sed05g2402 971 Pfam twin BRCT domain 103 166 IPR001357 -
Sed05g2402 971 Pfam twin BRCT domain 190 251 IPR001357 -
Sed05g2402 971 ProSiteProfiles BRCT domain profile. 564 651 IPR001357 -
Sed05g2402 971 FunFam DNA topoisomerase II binding protein 1 187 276 - -
Sed05g2402 971 Pfam BRCA1 C Terminus (BRCT) domain 568 615 IPR001357 -
Sed05g2402 971 Pfam BRCA1 C Terminus (BRCT) domain 374 449 IPR001357 -
Sed05g2402 971 Gene3D BRCT domain 97 185 IPR036420 -
Sed05g2402 971 FunFam Transcription coactivator 562 657 - -
Sed05g2402 971 ProSiteProfiles BRCT domain profile. 371 463 IPR001357 -
Sed05g2402 971 SUPERFAMILY BRCT domain 186 270 IPR036420 -
Sed05g2402 971 FunFam Transcription coactivator 97 185 - -
Sed05g2402 971 CDD BRCT_TopBP1_rpt2_like 186 259 - -
Sed05g2402 971 MobiDBLite consensus disorder prediction 924 949 - -
Sed05g2402 971 MobiDBLite consensus disorder prediction 512 553 - -
Sed05g2402 971 MobiDBLite consensus disorder prediction 898 951 - -
Sed05g2402 971 MobiDBLite consensus disorder prediction 512 528 - -
Sed05g2402 971 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Sed05g2402 971 ProSiteProfiles BRCT domain profile. 664 747 IPR001357 -
Sed05g2402 971 SUPERFAMILY BRCT domain 660 748 IPR036420 -
Sed05g2402 971 SUPERFAMILY BRCT domain 373 457 IPR036420 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2402 Sed-Chr5:36403609 Sed08g1810 Sed-Chr8:32857740 1.20E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2402 K10728 - csv:101212525 1572.37