Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2427 ATGACGTCAAGTGTTGATGAAGATGATATAGAGCCAGCCATGGAGTCTGGACAATCTGAGGAAGCAGTAGTTGTCCGGGAAGTCTGTGCGAATGGTATCTCCATAAAAACAACAGAAGTAGAAGCAAAGCTCGATGAGGGAAATATTGAAGAGGCAGAATCTTCATTACGGGAAGGGTTATCTCTCAATTTTGAGGAAGCCAGAGCCCTTCTTGGAAAGTTGGAATATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGTATTGATCTCCAAGCAGCTATTCAACGATTACAACCTAGCGTGGCTGAGAAGACGCCTCCAAAAAAAGGACGTGCGCGTCCTGAATCTCAACATGCAGTTTCGCAGCATGCTGCAAACCTGGTGCTTGAAGCCATATATTTAAAAGTTAAGTCTCTTCAGAAGCTAGGGAGAGTAACTGAGGCAGCTGATGAGTGTACTAGTGTACTTGATGCCGTAGAGAAGATATTCAGCCAAGGGATTTCTGATGGGCAAGTGGATGGTAGATTGCAAGAGACTGTCAGTCAGGCTGTAGAACTCCTCCCTGAGCTATGGAAGCAGGCTGGCTGTTTCCAGGAAGTAATATCTGCCTATAGGCGTGCCCTCTTAAACGAATGGAACCTCACTGATGAAAGCTGGGCTAGGATCCAGAAAGGATTTGCTGTGTTTTTGCTTTACAGTGGAGTAGAGGCCGGTCCTCCTAGTTTAGTTTTTCAACTTGAAGGTTCATATGTGCCGAAAAATAATTTGGAAGAAGCAATTCTACTGTTGATGCTTCTTGTGAAGAAATGTTACCTTGGTACGATAAAATGGGATCCATCAGTGATGGAGCACCTAATATTTGCTCTATCCTTATGCAGCCAGACTTCTGTCTTAGCAAAACAACTTGAAGAGGTCATGCCTGGAGTATATCACCGTGTCGATCGTTGGAAATCTTTAGCTCTTTGTTATTGTGCAGCAGGGCAGAACAAAGTTGCCTTGAATCTTCTGAAAAAATCTCTACATAAACACGAGCAACCAGATAATGTAACAGCCTTATTACTGGCTGCCAAGATCTGCAGTGAGGATCCTTATCTCGCTTCTGAAGGTGTTGGATATGCCCAACGGGCAACAGACAATGCTAAAGGAGATGAAGAACATTTAAAGGGTGTGGGTCTTCGCTTGTTAGGTCTTTGTTTGGGAAAACAAGCCAAAATGTCTTCTTCTGACTTTGAAAGATCTCGTCTTCAGTCAGAGGCATTGAAATCTCTTGAGGCAGCAAGTGGTCTGGAGAGCAATAACTTAGACTTGATGCTTGAGTTAGGAGTACAGCATTCGGAGTATCGGAACTTGAATGCTGCTATGCAATATGCAAAGAAGTTCATTGATGAAACTGGTGGTTCTGTCTTAAAAGGCTGGCAGTTGCTTGCTCTTGTTTTGTCTGGCCAAAAGAGATTTTCAGAGGCTGAAGTGGTCACTGATGCTGCAATGGATGAAACCACAAAATGGGAACAAGGACCGCTTCTCAGTCTTAAGGCAAAACTGAAGATATCTCAATCATTGCATATGGATGCTATTGAAACCTACCGTTATCTCCTTGCATTAGTTCAAGCACAAAAGAAATCCTTTGGGCCACTCAGAATTGTCCCTCAGGTTGAAGATGATAAACTGAACGAATTTGAAGTTTGGAACGGTCTAGCCAATTTATACTCCAGTCTTTCACATTGGAAAGATGCAGAGATATGTCTAGGGAAAGCAAGAGAGCTGAAAGAGTTCTCTCCAGAAGTACTACATACTGAAGGTCTAATGTGCGAAGGACGTGAGAAAGTACAGGATGCTCTAGCTGCTTATATTAATGCTATCCTACTTGAGCCGACTTATGTTCCTTGCAAGATTTTGATTGGTGCAATTTGGTCAAAAGCGGGGCCGGATGCATTGCCGATAGCAAGAAGCTTACTTTCAGACGCGTTGAGGTTAGATCCTACCAACCGTAAGGCGTGGTTTTACTTGGGGATGATTCATAGGGACGAAGGACGAATGGCTGATGCTATAGACTGCTTCCAGGCAGCCGCCATGCTTGAAGAATCAGATCCCATTGAAAGCTTCAGCAGTATTCTCTAG 2127 43.77 MTSSVDEDDIEPAMESGQSEEAVVVREVCANGISIKTTEVEAKLDEGNIEEAESSLREGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSVAEKTPPKKGRARPESQHAVSQHAANLVLEAIYLKVKSLQKLGRVTEAADECTSVLDAVEKIFSQGISDGQVDGRLQETVSQAVELLPELWKQAGCFQEVISAYRRALLNEWNLTDESWARIQKGFAVFLLYSGVEAGPPSLVFQLEGSYVPKNNLEEAILLLMLLVKKCYLGTIKWDPSVMEHLIFALSLCSQTSVLAKQLEEVMPGVYHRVDRWKSLALCYCAAGQNKVALNLLKKSLHKHEQPDNVTALLLAAKICSEDPYLASEGVGYAQRATDNAKGDEEHLKGVGLRLLGLCLGKQAKMSSSDFERSRLQSEALKSLEAASGLESNNLDLMLELGVQHSEYRNLNAAMQYAKKFIDETGGSVLKGWQLLALVLSGQKRFSEAEVVTDAAMDETTKWEQGPLLSLKAKLKISQSLHMDAIETYRYLLALVQAQKKSFGPLRIVPQVEDDKLNEFEVWNGLANLYSSLSHWKDAEICLGKARELKEFSPEVLHTEGLMCEGREKVQDALAAYINAILLEPTYVPCKILIGAIWSKAGPDALPIARSLLSDALRLDPTNRKAWFYLGMIHRDEGRMADAIDCFQAAAMLEESDPIESFSSIL 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36611483 36617925 - Sed0020107.2 Sed05g2427 715053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2427 708 MobiDBLite consensus disorder prediction 1 15 - -
Sed05g2427 708 MobiDBLite consensus disorder prediction 1 20 - -
Sed05g2427 708 SUPERFAMILY TPR-like 44 492 IPR011990 GO:0005515(InterPro)
Sed05g2427 708 Gene3D Tetratricopeptide repeat domain 548 701 IPR011990 GO:0005515(InterPro)
Sed05g2427 708 Gene3D Tetratricopeptide repeat domain 32 219 IPR011990 GO:0005515(InterPro)
Sed05g2427 708 Gene3D Tetratricopeptide repeat domain 243 546 IPR011990 GO:0005515(InterPro)
Sed05g2427 708 ProSiteProfiles TPR repeat profile. 666 699 IPR019734 GO:0005515(InterPro)
Sed05g2427 708 Pfam Tetratricopeptide repeat 650 693 - -
Sed05g2427 708 Pfam Tetratricopeptide repeat 39 91 - -
Sed05g2427 708 FunFam NPG1 553 702 - -
Sed05g2427 708 SUPERFAMILY TPR-like 515 696 IPR011990 GO:0005515(InterPro)
Sed05g2427 708 PANTHER PROTEIN NPG1 17 706 IPR043376 -
Sed05g2427 708 SMART tpr_5 666 699 IPR019734 GO:0005515(InterPro)
Sed05g2427 708 SMART tpr_5 472 505 IPR019734 GO:0005515(InterPro)
Sed05g2427 708 SMART tpr_5 596 629 IPR019734 GO:0005515(InterPro)
Sed05g2427 708 SMART tpr_5 562 595 IPR019734 GO:0005515(InterPro)
Sed05g2427 708 SMART tpr_5 316 349 IPR019734 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2427 Sed-Chr5:36611483 Sed06g1106 Sed-Chr6:30233045 1.70E-263 dispersed
Sed05g2426 Sed-Chr5:36611483 Sed05g2427 Sed-Chr5:36611483 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2427 K21843 - csv:101206641 1265.75