Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2433 ATGATTATGGAGCAGCTAAGAAGATACTGCCTCCTTCAGATCTTTGTTGCTTTATCTGTTTCATTTCTGATTACTGCACAGGATCAATCAGGATTCCTTAGCATTGATTGTGGAATTTCAACGAATTCAAGCTATACAGACAGTGTAACAGGCATAAAGTACATTTCTGATGCAAACTTCACAGAAAGTGGAGTAAGTAAGAGCATATCATCAGATTTCAACACTACCATTCTTCCACAGCAATTCTGGAATGTTAGAAGCTTTCCTGAAGGGGAGAGGAACTGTTACATCGTAAAGCTTGCTCGAGGTAAAGGTTTCAAGTATCTGATCAGAGCGAGTTTCATGTACGGAAACTACGACGGCGAAGGTAAAGCACCGGTTTTCGATCTGTACATGGGAGTTAATAAATGGGATTCAGTAGTACTGAAGGATGAATCCAGTATCACAACCAAAGAAGTTGTACATGCACTTCCTACATCTTCAGTATGCATATGTCTGGTGAATATTGGCTTTGGATTACCTTTTATATCAGCATTGGAGTTTAGGCTATTGAATAATGCTAGTTATGTTACCAACTTCGAATTGCTAGCTCTCCATACACGGTTGGATATAGGATCGACTATCAATAAAACTGTCAGGTACCAAGACGATTTTTGTGATAGGATTTGGTCGCCACAAAACTTTCTTAATTACAAAATTATAAGCACTCCATCCACAGTTGATTTAGGAACTAGCAATAGTTATAATTTACCAGGAATTGTAATGAGCACTGCTACCACAACCAATAATGCCAGTGCTCCTCTAGAATTTCATTGGACTCCTGAAGATCCCAGTGCCCAATTTTACATATACATGCACTTTGCTGAACTGGAAAAGCTTCAAGCCAACCAATGGAGGGAATTCAACATCTTTCAAAATGAGGATCATTTTCAAGGACCTTTCACTCCTGATTACATGCAGTATACTACATTGTTTAGCACAGACCCAATCAGTGGAGAATCTATTGACTTGAAATTTTTAAAAACCAATAAATCAAATCTTCCACCCATCCTCAATGCTCTTGAAATCTACAGAGTGATAGATACATCACAATTGCGCACTGATGAGAAGGACGTTAAAGCTCTGATGAACATCAAATCATTTTATGGAGTAAGAAAGAATTGGCAGGGTGATCCATGTCTGCCAGAATCCTTCCTGTGGCACGGTCTTAAATGTAGCTATGATGAGAGTTCTAATAGAATCACCTCCTTGAGCTTATCTTCGAGTGGATTGGTGGGGGAAATAGCTACTTCTATAACTGACCTCATGTCATTACAATATTTGGATTTATCGAACAATAACTTAAGTGGACCAGTGCCTGATTTTCTATCTGAGTTGCACTCCTTGAAAGTTTTAGACTTGAGGAACAACCCACTTCTTGGTTCTATACCAAACGAACTCATGGAAAGATCGAAAAATGGATCCCTTTCGATAAGAGTTGGAGGAGACTCTGATCTTTGTGCTACATCTTGCCAAAAGAAGAAGAAAAAGAAGAGTTACATTATCCCAATTGTAGCAATAATTTCATCATTGCTGGTTGTCTTAGCTGCAACAGCAGTCTGGATAATAAAGTGGAGAAAACAAGCCCAAAAAAATCCCGTTATAAGACTCGGATCACTAGAGCCAAAGAAACAGCAGCTATCTTACTCACAAGTACGACGTATGACAAACGACTTCGAGAAAAAAATTGGGGAAGGAGCATTCGCAAAAGTATTCCTTGGTTACTTAGAAAACTCCCAAGTTGCTGTGAAGGTCCTCAAGTCTTCGGTTCAAGGCTATAAAGAATTTGAAGCAGAGGTTAATCTTTTGCTGAGAATTCATCATACAAACTTGACAAGCCTTGTTGGATACTGCTATGAAAAGACCAACCTTGTTCTTATCTATGAGTACATAAATAATGGCAACTTAAAAGATCATCTATTAGGTGGAAATGTTAGACTTCTTAGTTGGGAGGAAAGGATGCAAATAGCGGTCGATGCAGCGCAAGGATTGGAGTATCTGCATCATGGTTGTAAGCCACCTATTGTTCACAGAGATGTGAAGTCTGCAAATATCCTCGTGAACAAAAAATTCCAATCCAAAATAGCTGATTTTGGTCTATCAAAGAGGTTCCCGACTGAAGGTCATACTCATTTGACAACGGTTGTTGCAGGCACGGACGGTTATCTCGATCCCGAGTATTATGCAACTGGCTGGTTGACCGAGAAAAGCGATGTATACAGTTTCGGAGTTCTTATATTGGAAATAATCACTTCCCTTCCGGTCCTTCGAATTGATAGAGCTACATCAAAGAGAAGTCATATAAGCCAATGGGTTAAGCACTTGATGATAACAGGTGATATAAAGGGCATTGTTGATCAGAGGCTAAGAGAAAATTTTGACTTGAGCTCTGCTTGGAAGGCTGTGGAGATTGCTATGACATGTTTGTCACTGAATTCCATAGAGAGGCCTAATATGAAAGAAGTGGTTGTGGAGTTGAGTGAGTGTTTGAAATTAGAGAGAGCTCGAAAACGAAGAAACGCCATGTCTGATATCGAAAAATCAAATGCAGTTAGCAGGAATTTCAGAGAGAGTGAAGTAACACCACGGGCTAGATAA 2637 39.4 MIMEQLRRYCLLQIFVALSVSFLITAQDQSGFLSIDCGISTNSSYTDSVTGIKYISDANFTESGVSKSISSDFNTTILPQQFWNVRSFPEGERNCYIVKLARGKGFKYLIRASFMYGNYDGEGKAPVFDLYMGVNKWDSVVLKDESSITTKEVVHALPTSSVCICLVNIGFGLPFISALEFRLLNNASYVTNFELLALHTRLDIGSTINKTVRYQDDFCDRIWSPQNFLNYKIISTPSTVDLGTSNSYNLPGIVMSTATTTNNASAPLEFHWTPEDPSAQFYIYMHFAELEKLQANQWREFNIFQNEDHFQGPFTPDYMQYTTLFSTDPISGESIDLKFLKTNKSNLPPILNALEIYRVIDTSQLRTDEKDVKALMNIKSFYGVRKNWQGDPCLPESFLWHGLKCSYDESSNRITSLSLSSSGLVGEIATSITDLMSLQYLDLSNNNLSGPVPDFLSELHSLKVLDLRNNPLLGSIPNELMERSKNGSLSIRVGGDSDLCATSCQKKKKKKSYIIPIVAIISSLLVVLAATAVWIIKWRKQAQKNPVIRLGSLEPKKQQLSYSQVRRMTNDFEKKIGEGAFAKVFLGYLENSQVAVKVLKSSVQGYKEFEAEVNLLLRIHHTNLTSLVGYCYEKTNLVLIYEYINNGNLKDHLLGGNVRLLSWEERMQIAVDAAQGLEYLHHGCKPPIVHRDVKSANILVNKKFQSKIADFGLSKRFPTEGHTHLTTVVAGTDGYLDPEYYATGWLTEKSDVYSFGVLILEIITSLPVLRIDRATSKRSHISQWVKHLMITGDIKGIVDQRLRENFDLSSAWKAVEIAMTCLSLNSIERPNMKEVVVELSECLKLERARKRRNAMSDIEKSNAVSRNFRESEVTPRAR 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36644941 36653809 + Sed0023207.1 Sed05g2433 715059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2433 878 Pfam Protein kinase domain 573 836 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2433 878 PRINTS Leucine-rich repeat signature 438 451 - -
Sed05g2433 878 PRINTS Leucine-rich repeat signature 459 472 - -
Sed05g2433 878 FunFam Leucine-rich repeat receptor-like kinase 370 501 - -
Sed05g2433 878 PANTHER OS07G0107800 PROTEIN-RELATED 26 847 - -
Sed05g2433 878 Gene3D Phosphorylase Kinase; domain 1 551 643 - -
Sed05g2433 878 SUPERFAMILY Protein kinase-like (PK-like) 553 838 IPR011009 -
Sed05g2433 878 SUPERFAMILY L domain-like 397 481 - -
Sed05g2433 878 SMART serkin_6 570 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2433 878 Pfam Malectin-like domain 35 359 IPR024788 -
Sed05g2433 878 ProSiteProfiles Leucine-rich repeat profile. 437 459 IPR001611 GO:0005515(InterPro)
Sed05g2433 878 ProSitePatterns Serine/Threonine protein kinases active-site signature. 688 700 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2433 878 ProSitePatterns Protein kinases ATP-binding region signature. 576 597 IPR017441 GO:0005524(InterPro)
Sed05g2433 878 Gene3D Transferase(Phosphotransferase) domain 1 644 867 - -
Sed05g2433 878 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 644 852 - -
Sed05g2433 878 CDD STKc_IRAK 576 841 - -
Sed05g2433 878 Gene3D Ribonuclease Inhibitor 370 492 IPR032675 -
Sed05g2433 878 ProSiteProfiles Protein kinase domain profile. 570 843 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2433 878 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2433 Sed-Chr5:36644941 Sed09g1631 Sed-Chr9:39775066 4.70E-207 dispersed
Sed05g2433 Sed-Chr5:36644941 Sed05g2434 Sed-Chr5:36644941 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79212 PF12819 Malectin_like 9.60E-108 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2433 - - - 0.0