Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2484 ATGCAAAGCTTTCGATTCTTACGAAATCCTCTGCTTCAACAACCCAATAATGCTCAATTCTTCGTCTCTCAAACCGCTCGTTTTCTCCCTTTGAAACCCATTTCCAAGAATTTCACTTCCCAAATGGGGTTTTCGCCATCCTCTTCCTCGTCTAAGCTCTTGTTCCGGCAGTTGTTCGAGAAGGACTCGTCCACGTACACTTATCTGCTCGCTGATGTTTCCCATCCTGATAAACCCGCGCTTTTGATTGATCCGGTTGACAAAAGTGTAGATAGGGATCTTAACCTAATAAGGGAACTGGGACTGAAGCTTGTGTATGCTATGAACACTCATGTTCATGCTGATCATGTCACTGGCACTGGCCTCATCAAGACTAAAGTTCCTGGAGCGAAATCTGTAATCTCGAGAGCAAGTGGTTCAAAAGCTGATGTGTTGGTTGAATTTGGCGATAGAATTTCTTTTGGTGATCTATTTCTGGAGGTTCGTGCTACTCCTGGGCACACTTCAGGATGTGTCACCTATGTAACAGGGGATGAAACCGATCAGCCCCATCCTAGGATGGCATTCACTGGGGATGCTCTGTTGATACGTGGATGTGGAAGGACAGATTTTCAGGGTGGAAGTTCACAGCAACTCTATGAATCTGTACACTCGCAGATCTTCACCCTGCCAAAGGATACATTGATCTACCCCGCCCACGATTACAAGGGATTTAGTGTTAGTTCTGTAGGCGAAGAGATGGAGTACAATCCCCGGCTTACCAAGGATCTGGAAGAATTCAAGAAAATCATGGAGAATTTGAAACTGGCATATCCCAAGATGATGGACATAGCAGTTCCAGCAAATTTGGTCTGTGGATTGCAAGATCCAGCTGATTAA 879 45.16 MQSFRFLRNPLLQQPNNAQFFVSQTARFLPLKPISKNFTSQMGFSPSSSSSKLLFRQLFEKDSSTYTYLLADVSHPDKPALLIDPVDKSVDRDLNLIRELGLKLVYAMNTHVHADHVTGTGLIKTKVPGAKSVISRASGSKADVLVEFGDRISFGDLFLEVRATPGHTSGCVTYVTGDETDQPHPRMAFTGDALLIRGCGRTDFQGGSSQQLYESVHSQIFTLPKDTLIYPAHDYKGFSVSSVGEEMEYNPRLTKDLEEFKKIMENLKLAYPKMMDIAVPANLVCGLQDPAD 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36901610 36905820 + Sed0008182.1 Sed05g2484 715110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2484 292 Pfam Metallo-beta-lactamase superfamily 65 233 IPR001279 -
Sed05g2484 292 SMART Lactamase_B_5a 64 233 IPR001279 -
Sed05g2484 292 PANTHER PERSULFIDE DIOXYGENASE ETHE1 39 289 IPR051682 GO:0005739(PANTHER)|GO:0006749(PANTHER)|GO:0050313(PANTHER)|GO:0070813(PANTHER)
Sed05g2484 292 FunFam Persulfide dioxygenase ETHE1, mitochondrial 50 287 - -
Sed05g2484 292 SUPERFAMILY Metallo-hydrolase/oxidoreductase 62 272 IPR036866 -
Sed05g2484 292 Gene3D - 54 282 IPR036866 -
Sed05g2484 292 CDD POD-like_MBL-fold 54 235 IPR044528 GO:0006749(InterPro)|GO:0050313(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2484 K17725 - - csv:101221943 484.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2521 Sed-Chr4:38107534 Sed05g2484 Sed-Chr5:36901610 2.30E-120 dispersed
Sed04g2520 Sed-Chr4:38107117 Sed05g2484 Sed-Chr5:36901610 7.90E-140 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g876 Blo03g00727 . . . . . . . . . . . . . Sed05g2484 . . Bhi09g03592 Tan01g4230 Cmetu07g1493 . Hepe01g1486 Mch11g0961 . . . . . . . . Cone6ag0228 Cone9ag0261 . . Lsi04g01953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008021 0 1 1 1 0 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 2 33