Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2490 ATGTTCTTGTCTAGAACCCTGTTTGCTTGTTTTATTGGTTTCTTCTTCTTCATTGTTCGAATTCAATCTCAATCGACTAGGTTGCCCGTTGAGGAAGTGGAAGCCTTACAAGAAATAGGGGAGGTTTTAGGAAAAAGAGACTGGAATTTCAGTGCAGATCCTTGCAGTGGAGAGCATGGATGGATTTCTGAGGCCAACCAAATTCCCAATAATGTTTCTGGTTTTCAAAATAATCTCACCTGTGATTGCACCTTTCTGAATGACACTCTCTGCCATGTCATTAGCATAGTTCTCAAATCACAGAGCCTTCAAGGTACACTCCCGCCCGGTCTTGTTCGCTTGCCCTTTCTGCAGCAAATTGATCTCACTAGGAACTATCTCAGTGGCCAAATCCCTCCAGAATGGGGATCTATGAATCTCGTCAACATTTCCCTACTTGGAAATCGGTTGACGGGTTTGATTCCAGAAGAGATTGCAAACATCACCACTCTAGAGAGTTTGGTTTTAGAAATCAATCAGCAGTCAGGAAGCATTCCTCAAGCGCTTGGAAATTTGCCCCAATTACAGAGATTACACCTTACCTCGAACAACTTTTCTGGGGAGCTGCCAATGTCTCTGGCAAAGCTTACCACGTTGAAGGAATTTCGAGTTGGTGACAATAACTTCACAGGCCCAATACCGAATTTCATAAGTAATTGGACAAATCTTACTGAATTATTCATTCAGGCAAGTGGATTGAGTGGGCCTATTCCTTCTGACATTGGACTATTGACAAAATTATCTGACTTGAGAATCAGCGACTTGAGCGGACCTTCATCACCCTTTCCATCTCTAAGTAATTTGGAAGACATGAAAATTCTGATATTGAGAAGTTGCAACATCACTGGAAGGCTGCCCAACTATCTGGATAGGATGCCATCCTTGAAAATCTTAGATCTCAGCTTTAACAAACTAAGTGGACAAATTCCGACCAGATTTAATGCTCTTAAAGGGCTGGATAACATATTTTTAACTGGAAACATGCTAAATGGATCAGTGCCAGATTGGATGTTGAAGGGAAAGGGCATTGATCTTTCCTATAATAATCTTACAGTCAGGGTTGCTGGGGAAAGCTGTCGGTCTCAAAAAGTGAACCTCTTTGCAAGCTCTTCACAAGACAGTGATTATGGAATTCTTTCATGTTTAGCAGGCTCATCTTGTCCAAAATCTTGGTACTCTCTTCATATAAATTGTGGTGGGAAGGAACAAACCATAAATGGAACTACAGTTTTTAAAGGAGATCGAAATACAGGCAGCTCTATATTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACTGGTAGTTTCTTGGATGATGGTGACTCTCAAGATGAATACGCTGCAACTAATTCTTCTACTCTATCTATGACAAATCCTGAGCTGTACATGACTGCGCGAGTTTCTCCATTGTCTGTTACTTATTATGCATTTTGTATGGGAAATGGTAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACATTCAGTAGTCTCGGCAGACGCATATTTGATGTTTATATTCAGAAAGAACTGGTGCTAGAGGATTTCAATATAGTGGATGCAGCAGGTGGCGTTGGTAAAGAAGTCATAAAAAAAATCTCAGTTACCGTGGCGAATGGTACGTTGGAGATCCGCTTCTATTGGGCCGGGAAGGGGACGAATGCTATCCCAGTGAGTGGAGTCTATGGTCCTCTTATATCAGCTATATCAGTAGATCCTGACTTTGAGACTCCATCCGAGGGCGGAGAAACTGGAAAGTCTGGTATATCTGTGGGTGCAGTGATCGGAATTGCAGCTGCTAGTGTTTTTGTTATATTATTGGTTCTCGGAGTCCTATGGTGGAGTGTATGTCTACGGCGGGAAAGGACACTTGAACAAGAGTTGCGAGGTTTGGATTTGCAAACTTGCTCTTTTACATTAAAGCAAATAAAAGCCGCTACAAACAATTTTGATGCTGTCAATAAGCTTGGAGAAGGTGGTTTCGGTTCTGTCTATAAGGGTGTTCTTGCGGATGGCACAACAATTGCAGTAAAACAGCTGTCTTCAAAATCAAAGCAAGGAAATCGTGAGTTTGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTGTTGAAGGAAATCAGCTTTTGTTAGTATACGAATACATGGAAAACAATAGCCTTGCACATGCCTTGTTTGGTCAAGAAGAAAGTGAACTAGAACTGAATTGGTCAAAAAGGCAAAAGATCTGTGTTGGTATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCCACACTAAAGATTGTCCACAGAGACATCAAAGCTACCAATGTTCTGCTGGACAAAGATCTAAACCCTAAGATATCTGACTTCGGTTTGGCAAAGCTTGATGAAGGAGAAAAGTCCCACATAAGTACTCGGATCGCTGGAACTTTTGGGTACATGGCACCGGAATATGCAATGCGAGGGCACTTGACCGATAAAGCAGACGTTTATAGCTTTGGGGTTGTGGCTTTAGAAATAGTTAGCGGAAGAAGCAACACTACTTTCAGGGCAGATAACGATTCCTTTTATCTTCTAGACTCGGCAATGAAGTTGAAAGAGAAAAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAAATTCAACAAGGGAGAGGCATTGAAAATGATCAAAATTGCTCTCCACTGCACTAATGTCTCTCCTGCAGCAAGGCCTAACATGTCATCAGTAGTGAGCATGCTAGAAGGCGAGCAGGCTGTCGAGGACATAGTGCCAGATTCAAGTGTAACTAATGACGCAATAAACACAGTATGGACTAATTTATTGGAGGACGCCGAACGGTCTAAGGACGAGAGCCAGAAGTATGGTTTGTTTGCTGATGTCTCAGCTACAGGTTCTTCAACATCTGCGAGTGATCTCTATCCGATTAACGTATCGCAATACTTGAATATTAGAGAGACTAGACTATGA 3051 41.82 MFLSRTLFACFIGFFFFIVRIQSQSTRLPVEEVEALQEIGEVLGKRDWNFSADPCSGEHGWISEANQIPNNVSGFQNNLTCDCTFLNDTLCHVISIVLKSQSLQGTLPPGLVRLPFLQQIDLTRNYLSGQIPPEWGSMNLVNISLLGNRLTGLIPEEIANITTLESLVLEINQQSGSIPQALGNLPQLQRLHLTSNNFSGELPMSLAKLTTLKEFRVGDNNFTGPIPNFISNWTNLTELFIQASGLSGPIPSDIGLLTKLSDLRISDLSGPSSPFPSLSNLEDMKILILRSCNITGRLPNYLDRMPSLKILDLSFNKLSGQIPTRFNALKGLDNIFLTGNMLNGSVPDWMLKGKGIDLSYNNLTVRVAGESCRSQKVNLFASSSQDSDYGILSCLAGSSCPKSWYSLHINCGGKEQTINGTTVFKGDRNTGSSIFFVTGTNWAISNTGSFLDDGDSQDEYAATNSSTLSMTNPELYMTARVSPLSVTYYAFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRIFDVYIQKELVLEDFNIVDAAGGVGKEVIKKISVTVANGTLEIRFYWAGKGTNAIPVSGVYGPLISAISVDPDFETPSEGGETGKSGISVGAVIGIAAASVFVILLVLGVLWWSVCLRRERTLEQELRGLDLQTCSFTLKQIKAATNNFDAVNKLGEGGFGSVYKGVLADGTTIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCVEGNQLLLVYEYMENNSLAHALFGQEESELELNWSKRQKICVGIARGLAYLHEESTLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEGEKSHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTTFRADNDSFYLLDSAMKLKEKNSLMELVDPRLGSKFNKGEALKMIKIALHCTNVSPAARPNMSSVVSMLEGEQAVEDIVPDSSVTNDAINTVWTNLLEDAERSKDESQKYGLFADVSATGSSTSASDLYPINVSQYLNIRETRL 1016
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36926126 36936667 - Sed0010417.1 Sed05g2490 715116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2490 1016 Gene3D Ribonuclease Inhibitor 203 269 IPR032675 -
Sed05g2490 1016 FunFam Putative LRR receptor-like serine/threonine-protein kinase 746 953 - -
Sed05g2490 1016 Pfam Malectin domain 406 589 IPR021720 -
Sed05g2490 1016 ProSiteProfiles Protein kinase domain profile. 670 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2490 1016 Gene3D Ribonuclease Inhibitor 270 385 IPR032675 -
Sed05g2490 1016 Gene3D Ribonuclease Inhibitor 52 202 IPR032675 -
Sed05g2490 1016 SUPERFAMILY L domain-like 76 350 - -
Sed05g2490 1016 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 594 - -
Sed05g2490 1016 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 269 - -
Sed05g2490 1016 Gene3D Transferase(Phosphotransferase) domain 1 746 957 - -
Sed05g2490 1016 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524(InterPro)
Sed05g2490 1016 Pfam Protein tyrosine and serine/threonine kinase 673 941 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2490 1016 SUPERFAMILY Protein kinase-like (PK-like) 655 949 IPR011009 -
Sed05g2490 1016 SMART serkin_6 670 941 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2490 1016 Pfam Leucine Rich Repeat 307 327 IPR001611 GO:0005515(InterPro)
Sed05g2490 1016 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Sed05g2490 1016 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515(InterPro)
Sed05g2490 1016 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 20 954 IPR051824 -
Sed05g2490 1016 Gene3D Phosphorylase Kinase; domain 1 635 745 - -
Sed05g2490 1016 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 639 745 - -
Sed05g2490 1016 Gene3D - 404 593 - -
Sed05g2490 1016 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2490 1016 CDD STKc_IRAK 676 943 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2490 Sed-Chr5:36926126 Sed05g2492 Sed-Chr5:36926126 0.00E+00 dispersed
Sed05g2490 Sed-Chr5:36926126 Sed05g2491 Sed-Chr5:36926126 0.00E+00 tandem
Sed06g0755 Sed-Chr6:7885959 Sed05g2490 Sed-Chr5:36926126 1.20E-46 transposed
Sed09g0573 Sed-Chr9:6495868 Sed05g2490 Sed-Chr5:36926126 1.90E-24 transposed
Sed04g2478 Sed-Chr4:37892077 Sed05g2490 Sed-Chr5:36926126 1.30E-187 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79214 PF07714 PK_Tyr_Ser-Thr 1.20E-50 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2490 - - - 0.0