Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2491 ATGAATCTCGTCAACATTTCCCTACTTGGAAATCGGTTGACGGGTTTGATTCCAGAAGAGATTGCAAACATCACCACTCTAGAGAGTTTGGTTTTAGAAATCAATCAGCAGTCAGGAAGCATTCCTCAAGCGCTTGGAAATTTGCCCCAATTACAGAGATTACACCTTACCTCGAACAACTTTTCTGGGGAGCTGCCAATGTCTCTGGCAAAGCTTACCACGTTGAAGGAATTTCGAGTTGGTGACAATAACTTCACAGGCCCAATACCGAATTTCATAAGTAATTGGACAAATCTTACTGAATTATTCATTCAGGCAAGTGGATTGAGTGGGCCTATTCCTTCTGACATTGGACTATTGACAAAATTATCTGACTTGAGAATCAGCGACTTGAGCGGACCTTCATCACCCTTTCCATCTCTAAGTAATTTGGAAGACATGAAAATTCTGATATTGAGAAGTTGCAACATCACTGGAAGGCTGCCCAACTATCTGGATAGGATGCCATCCTTGAAAATCTTAGATCTCAGCTTTAACAAACTAAGTGGACAAATTCCGACCAGATTTAATGCTCTTAAAGGGCTGGATAACATATTTTTAACTGGAAACATGCTAAATGGATCAGTGCCAGATTGGATGTTGAAGGGAAAGGGCATTGATCTTTCCTATAATAATCTTACAGTCAGGGTTGCTGGGGAAAGCTGTCGGTCTCAAAAAGTGAACCTCTTTGCAAGCTCTTCACAAGACAGTGATTATGGAATTCTTTCATGTTTAGCAGGCTCATCTTGTCCAAAATCTTGGTACTCTCTTCATATAAATTGTGGTGGGAAGGAACAAACCATAAATGGAACTACAGTTTTTAAAGGAGATCGAAATACAGGCAGCTCTATATTTTTTGTAACTGGAACAAATTGGGCAATCAGCAACACTGGTAGTTTCTTGGATGATGGTGACTCTCAAGATGAATACGCTGCAACTAATTCTTCTACTCTATCTATGACAAATCCTGAGCTGTACATGACTGCGCGAGTTTCTCCATTGTCTGTTACTTATTATGCATTTTGTATGGGAAATGGTAACTACACAGTAAGCCTCCATTTTGCAGAGATAATGTTTACTGATGACAAGACATTCAGTAGTCTCGGCAGACGCATATTTGATGTTTATATTCAGAAAGAACTGGTGCTAGAGGATTTCAATATAGTGGATGCAGCAGGTGGCGTTGGTAAAGAAGTCATAAAAAAAATCTCAGTTACCGTGGCGAATGGTACGTTGGAGATCCGCTTCTATTGGGCCGGGAAGGGGACGAATGCTATCCCAGTGAGTGGAGTCTATGGTCCTCTTATATCAGCTATATCAGTAGATCCTGACTTTGAGACTCCATCCGAGGGCGGAGAAACTGGAAAGTCTGGTATATCTGTGGGTGCAGTGATCGGAATTGCAGCTGCTAGTGTTTTTGTTATATTATTGGTTCTCGGAGTCCTATGGTGGAGTGTATGTCTACGGCGGGAAAGGACACTTGAACAAGAGTTGCGAGGTTTGGATTTGCAAACTTGCTCTTTTACATTAAAGCAAATAAAAGCCGCTACAAACAATTTTGATGCTGTCAATAAGCTTGGAGAAGGTGGTTTCGGTTCTGTCTATAAGGGTGTTCTTGCGGATGGCACAACAATTGCAGTAAAACAGCTGTCTTCAAAATCAAAGCAAGGAAATCGTGAGTTTGTGAATGAGATCGGCATGATATCTGCTTTGCAACACCCACATCTAGTCAAGCTTTATGGATGTTGTGTTGAAGGAAATCAGCTTTTGTTAGTATACGAATACATGGAAAACAATAGCCTTGCACATGCCTTGTTTGGTCAAGAAGAAAGTGAACTAGAACTGAATTGGTCAAAAAGGCAAAAGATCTGTGTTGGTATTGCAAGAGGTCTGGCTTATCTTCATGAAGAGTCCACACTAAAGATTGTCCACAGAGACATCAAAGCTACCAATGTTCTGCTGGACAAAGATCTAAACCCTAAGATATCTGACTTCGGTTTGGCAAAGCTTGATGAAGGAGAAAAGTCCCACATAAGTACTCGGATCGCTGGAACTTTTGGGTACATGGCACCGGAATATGCAATGCGAGGGCACTTGACCGATAAAGCAGACGTTTATAGCTTTGGGGTTGTGGCTTTAGAAATAGTTAGCGGAAGAAGCAACACTACTTTCAGGGCAGATAACGATTCCTTTTATCTTCTAGACTCGGCAATGAAGTTGAAAGAGAAAAACAGTTTAATGGAGCTAGTTGATCCAAGGTTAGGCTCCAAATTCAACAAGGGAGAGGCATTGAAAATGATCAAAATTGCTCTCCACTGCACTAATGTCTCTCCTGCAGCAAGGCCTAACATGTCATCAGTAGTGAGCATGCTAGAAGGCGAGCAGGCTGTCGAGGACATAGTGCCAGATTCAAGTGTAACTAATGACGCAATAAACACAGTATGGACTAATTTATTGGAGGACGCCGAACGGTCTAAGGACGAGAGCCAGAAGTATGGTTTGTTTGCTGATGTCTCAGCTACAGGTTCTTCAACATCTGCGAGTGATCTCTATCCGATTAACGTATCGCAATACTTGAATATTAGAGAGACTAGACTATGA 2640 41.55 MNLVNISLLGNRLTGLIPEEIANITTLESLVLEINQQSGSIPQALGNLPQLQRLHLTSNNFSGELPMSLAKLTTLKEFRVGDNNFTGPIPNFISNWTNLTELFIQASGLSGPIPSDIGLLTKLSDLRISDLSGPSSPFPSLSNLEDMKILILRSCNITGRLPNYLDRMPSLKILDLSFNKLSGQIPTRFNALKGLDNIFLTGNMLNGSVPDWMLKGKGIDLSYNNLTVRVAGESCRSQKVNLFASSSQDSDYGILSCLAGSSCPKSWYSLHINCGGKEQTINGTTVFKGDRNTGSSIFFVTGTNWAISNTGSFLDDGDSQDEYAATNSSTLSMTNPELYMTARVSPLSVTYYAFCMGNGNYTVSLHFAEIMFTDDKTFSSLGRRIFDVYIQKELVLEDFNIVDAAGGVGKEVIKKISVTVANGTLEIRFYWAGKGTNAIPVSGVYGPLISAISVDPDFETPSEGGETGKSGISVGAVIGIAAASVFVILLVLGVLWWSVCLRRERTLEQELRGLDLQTCSFTLKQIKAATNNFDAVNKLGEGGFGSVYKGVLADGTTIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLYGCCVEGNQLLLVYEYMENNSLAHALFGQEESELELNWSKRQKICVGIARGLAYLHEESTLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEGEKSHISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGVVALEIVSGRSNTTFRADNDSFYLLDSAMKLKEKNSLMELVDPRLGSKFNKGEALKMIKIALHCTNVSPAARPNMSSVVSMLEGEQAVEDIVPDSSVTNDAINTVWTNLLEDAERSKDESQKYGLFADVSATGSSTSASDLYPINVSQYLNIRETRL 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36926126 36936667 - Sed0010417.2 Sed05g2491 715117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2491 879 CDD STKc_IRAK 539 806 - -
Sed05g2491 879 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 91 - -
Sed05g2491 879 Gene3D Ribonuclease Inhibitor 1 68 IPR032675 -
Sed05g2491 879 Pfam Leucine Rich Repeat 170 190 IPR001611 GO:0005515(InterPro)
Sed05g2491 879 Pfam Leucine Rich Repeat 50 72 IPR001611 GO:0005515(InterPro)
Sed05g2491 879 SMART serkin_6 533 804 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2491 879 Pfam Malectin domain 269 452 IPR021720 -
Sed05g2491 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2491 879 ProSiteProfiles Protein kinase domain profile. 533 810 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2491 879 Gene3D Transferase(Phosphotransferase) domain 1 609 820 - -
Sed05g2491 879 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 267 457 - -
Sed05g2491 879 Pfam Protein tyrosine and serine/threonine kinase 536 804 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2491 879 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 817 IPR051824 -
Sed05g2491 879 Gene3D Ribonuclease Inhibitor 69 133 IPR032675 -
Sed05g2491 879 FunFam Putative LRR receptor-like serine/threonine-protein kinase 609 816 - -
Sed05g2491 879 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524(InterPro)
Sed05g2491 879 Gene3D - 267 456 - -
Sed05g2491 879 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 502 608 - -
Sed05g2491 879 Gene3D Ribonuclease Inhibitor 134 241 IPR032675 -
Sed05g2491 879 SUPERFAMILY Protein kinase-like (PK-like) 518 812 IPR011009 -
Sed05g2491 879 SUPERFAMILY L domain-like 2 227 - -
Sed05g2491 879 Gene3D Phosphorylase Kinase; domain 1 498 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2491 Sed-Chr5:36926126 Sed05g2499 Sed-Chr5:37050159 4.80E-252 dispersed
Sed05g2490 Sed-Chr5:36926126 Sed05g2491 Sed-Chr5:36926126 0.00E+00 tandem
Sed05g2491 Sed-Chr5:36926126 Sed05g2492 Sed-Chr5:36926126 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79215 PF07714 PK_Tyr_Ser-Thr 9.10E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2491 - - - 0.0