Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2493 ATGTCGTTGGTTGTGTCGCCCTATCTCGTTGCTGCATCCCTCGTTGTCTTTTGCTCTCTCACTTTTGGCCGCTTGCCTTTGGAAGAAGCTGAAGGACTAAGGTATGTTGGGAAGACATTGGGTAGAAAAGATTGGAATTTTAGTACAGAGGTGGATCCATGCAGTTCAAACTTTGGTTGGAACGACGATAACCCAAACTTCGATGTGAACTTCCAAAGTGATATCACTTGCAGCGATTGTAATGCAACTACCGCTTGCCACATTACCCATATAATTCTGAAGGCTCAGAGTTTGGCGGGAACACTTCCATCTGATCTATTCCGATTGCCTTACCTGGAAGAACTCGATCTCACTCGAAATTATCTTAGCGGCCAAATTCCTCCCCAATGGGGCAACACGAAGCTTCTCAAAATTTCGCTTCTTGGAAATCGGCTAAATGGTTCCGTTCCAGAAGAGATTGGAAACATCACTACTCTAAGAGAGTTGGTCCTAGAATCCAATCACTTTTCAGGAAGGTTGCCTTCAACCCTTGGAAATTTGTCCAACTTGGAAAAATTATACCTTGCCTCTAACAACTTCACTGGTGAGCTACCGACGTCTTTTGGAATGCTAACCACTTTGACCAACTTCCGAATCAGCGACAATAACTTTGTTGGGCAGATTCCCAATTTCATAAGGAATTGGGTAAATATAAGTCAACTAGTGATTCAAGCAAGTGGGTTAAGTGGGCCTATTCCTTCTGAAATCGGTCTTTTGGAAAATTTAATTGATCTGAGAATAAGTTACTTAAATGGAGCTTCATCGCCGTTTCCATCTCTTAATAATTTGAGTCAAATGAAATTTTTAGAGTTGAGAAATTGCAATATAACCGGAGAACTGCCTAGTTATTTGGCCAATATGACATCTTTGCAACTCTTAGATCTTAGCTTTAACAAAATAAGTGGGCAGATTCCATCCAGTTATCAGAGTCGTGTACATAGAGTGGCGAAAATATTCTTAACTGGAAACTTGCTAAATGGAACAGTGCCAGATTGGATTCTACAGGCAGGAGAAAACATTGATTTCTCTTATAATAAATTTGAATCACTTTCTTCGAATGCAAGTTGTCAAGTAAATAACATGAACTTCTTTGCGAGCACTTTACTAGACAATGATGTTAAGCTTGTGTCTTGTTTGCAAAATCACAAATGTGAAAAAGTTAAGCATCATCTCCATATAAATTGTGGCGGTAAGGAAGAAACCATTGATGGTGTTACGTTTGAAGGAGATGAAAGCATAGGTGGACCATCACAATTTCTTTTAAGCAAAACAAATTGGGCATCTAGCATAACTGGCGATTTTTTGGATGATGATCGTCAATTTGATAACTATGTTGCTCTCAATTCATCTTCATTGTCTATGAAAAATCCCAAACTCTATGAGACTGCTCGACTTACTCCAATCACTCTTACATACTATGTGTATTGCATGGCACCTGCAAACTACACGATAAGTCTCCATTTTGCAGAAATAATGTTTACTAATGATACAACTTATAAGAGCCTCGGAAGACGCATATTTGATGTCTATGTGCAGGGAAAGCGAGTGCTGAAGGATTTTAATATTGTAGATGCTGCAGGTGGTGTAGGTAAAGCTTCCATACAAGAAATTCCCGTCACCATTACTAACAGTACTTTGGAGATACGGTTTTATTGGACTGGGAAAGGGACAACTAATATTCCTACTAAGGGAGTCTATGGTCCTTTGGTTTCTGCCATTTCAGTAGAATCCAATGTTCCTGACTCTGAGCTTCCATTAGAAGGCCAAAACACCTTAGTTGTTGGCGCAATTGTTGGAATTTCAATTGCAGTAGTCTTGTTTATAATTTCCGCTATTGGAACTTTATGGTGGAGAGGGTGTCTTGGAAGGCATAGTAAACATCCACAAGTTTTGGAGGGTCTAAATATGCAAGTTGGTTCATTTACTTTAAAGCAAATCACGACCGCGACAAACAATTTTGACACTTCCAATAAGTTAGGGGAAGGTGGGTTTGGATCTGTTTATAAGGGTATTCTCTTAGATGGCACTGTGATTGCAGTGAAGCAACTTTCTTCAAAGTCAGTACAAGGAAAACGCGAATTTATAAATGAGATAGGCATGATATCTTCTTTGCAACATCCACATCTAGTAAAGTTGTATGGATGTTGCAATGAAGGAGATCAACTCTTGCTAGTATATGAATATATGGAAAATAATAATCTCGCCCGGGCTCTGTTTGGACCTCAAGGATGTCAATTAGAATTGAATTGGCCAACAAGACAAAATATTTGTATTGGTATTGCCAAAGGTTTGGCATTTCTTCATGAGGAGTCAGGATTGAAGATTGTTCATCGAGATATCAAAGGTCCTAATATATTGTTGGATAAAAATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTTGATGAAGAAGAGAATACTCACATCACCACTCGAGTCGCCGGAACATTTGGATATATGGCTCCAGAATATGCAACTCGAGGCTACTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTGGCACTGGAAATAGTGAGCGGAAGGAGCAACACTATATATCGTTCAAAGGATAAATGTCTTTATCTTCTTGATTGGGTAACTCGATTTCACTTTCGAATTCTGATTCAAACATATTAA 2688 38.99 MSLVVSPYLVAASLVVFCSLTFGRLPLEEAEGLRYVGKTLGRKDWNFSTEVDPCSSNFGWNDDNPNFDVNFQSDITCSDCNATTACHITHIILKAQSLAGTLPSDLFRLPYLEELDLTRNYLSGQIPPQWGNTKLLKISLLGNRLNGSVPEEIGNITTLRELVLESNHFSGRLPSTLGNLSNLEKLYLASNNFTGELPTSFGMLTTLTNFRISDNNFVGQIPNFIRNWVNISQLVIQASGLSGPIPSEIGLLENLIDLRISYLNGASSPFPSLNNLSQMKFLELRNCNITGELPSYLANMTSLQLLDLSFNKISGQIPSSYQSRVHRVAKIFLTGNLLNGTVPDWILQAGENIDFSYNKFESLSSNASCQVNNMNFFASTLLDNDVKLVSCLQNHKCEKVKHHLHINCGGKEETIDGVTFEGDESIGGPSQFLLSKTNWASSITGDFLDDDRQFDNYVALNSSSLSMKNPKLYETARLTPITLTYYVYCMAPANYTISLHFAEIMFTNDTTYKSLGRRIFDVYVQGKRVLKDFNIVDAAGGVGKASIQEIPVTITNSTLEIRFYWTGKGTTNIPTKGVYGPLVSAISVESNVPDSELPLEGQNTLVVGAIVGISIAVVLFIISAIGTLWWRGCLGRHSKHPQVLEGLNMQVGSFTLKQITTATNNFDTSNKLGEGGFGSVYKGILLDGTVIAVKQLSSKSVQGKREFINEIGMISSLQHPHLVKLYGCCNEGDQLLLVYEYMENNNLARALFGPQGCQLELNWPTRQNICIGIAKGLAFLHEESGLKIVHRDIKGPNILLDKNLNPKISDFGLAKLDEEENTHITTRVAGTFGYMAPEYATRGYLTDKADVYSFGIVALEIVSGRSNTIYRSKDKCLYLLDWVTRFHFRILIQTY 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36943206 36982792 - Sed0010607.1 Sed05g2493 715119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2493 895 SMART serkin_6 666 890 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2493 895 FunFam Lectin-domain containing receptor kinase A4.3 742 893 - -
Sed05g2493 895 Pfam Protein kinase domain 667 866 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2493 895 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 401 591 - -
Sed05g2493 895 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 21 883 IPR051824 -
Sed05g2493 895 Gene3D Ribonuclease Inhibitor 273 363 IPR032675 -
Sed05g2493 895 ProSiteProfiles Protein kinase domain profile. 666 895 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2493 895 ProSitePatterns Protein kinases ATP-binding region signature. 672 694 IPR017441 GO:0005524(InterPro)
Sed05g2493 895 CDD STKc_IRAK 672 883 - -
Sed05g2493 895 Gene3D Phosphorylase Kinase; domain 1 634 741 - -
Sed05g2493 895 Gene3D Transferase(Phosphotransferase) domain 1 742 892 - -
Sed05g2493 895 Pfam Malectin domain 404 586 IPR021720 -
Sed05g2493 895 Pfam Leucine Rich Repeat 280 300 IPR001611 GO:0005515(InterPro)
Sed05g2493 895 Pfam Leucine Rich Repeat 112 132 IPR001611 GO:0005515(InterPro)
Sed05g2493 895 Pfam Leucine Rich Repeat 159 180 IPR001611 GO:0005515(InterPro)
Sed05g2493 895 Pfam Leucine Rich Repeat 182 203 IPR001611 GO:0005515(InterPro)
Sed05g2493 895 Pfam Leucine Rich Repeat 302 321 IPR001611 GO:0005515(InterPro)
Sed05g2493 895 Gene3D Ribonuclease Inhibitor 43 197 IPR032675 -
Sed05g2493 895 Gene3D Ribonuclease Inhibitor 198 266 IPR032675 -
Sed05g2493 895 FunFam Nuclear pore complex protein NUP107 39 199 - -
Sed05g2493 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2493 895 SUPERFAMILY Protein kinase-like (PK-like) 645 880 IPR011009 -
Sed05g2493 895 SUPERFAMILY L domain-like 64 345 - -
Sed05g2493 895 Gene3D - 401 592 - -
Sed05g2493 895 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 741 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2488 Sed-Chr4:37926495 Sed05g2493 Sed-Chr5:36943206 9.20E-243 dispersed
Sed05g2493 Sed-Chr5:36943206 Sed05g2495 Sed-Chr5:36984638 0.00E+00 dispersed
Sed05g2492 Sed-Chr5:36926126 Sed05g2493 Sed-Chr5:36943206 2.30E-206 tandem
Sed05g2493 Sed-Chr5:36943206 Sed05g2494 Sed-Chr5:36984638 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79217 PF00069 Pkinase 1.10E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2493 - - - 0.0