Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2494 ATGTCGTTGGTTGCATCTCCAATTCTTGTTGCTGCATCCCTCGTTGTTTTTTGTTCTCTCACTGCTCTCACTCTTGGCTGGTTGCCTCTTGAAGAAGCTGATGGACTAAGGTACGTGGGTAAGACATTGGGTAGGAAAGATTGGAATTTCAGTGCAGAAGAAGATCCATGCGGCGCACAGTTTAGTTGGCAATCTCGAAACGACGATATCCCGACCACGGACCTCAAGTTCAACAGTACTATCATCTGCAGCCCTTGTAATGCTACTGCCCCTTGCCACATCACCCATATAATTCTGAAGGGGCAGAATTTGGCGGGCACACTTCCATCTGATCTCGTCCGATTGCCTTACCTGGAGGAACTTGATCTCTCTCGAAATTATCTTAGCGGCCAAATTCCTCCCCAATGGGGCAACACGAAGCTTCTCAAAATTTCGCTAACTGGAAATCGGTTGACGGGTTTTATTCCGAAAGAGATTGGAAATATCACTACTCTTAAGGATTTGGTCCTAGAATCCAATCACTTTTCAGGAAGGTTGCCTTCAACCCTTGGAAATTTGTCCAACTTGGAAAAATTATACCTTGCCTCTAACAACTTCACTGGTGAGCTACCGACTTCATTGGGAATGCTAACCACTTTGTTGAAATTCCGAATCAGCGACAACAACTTTGTTGGACAGGTACCCAATTTCATACGGAATTGGGTAAATATTAATCGAATAGTGATTCAAGCAAGTGGGTTGAAAGGGCCTATTCCTTCTGAAATCGGTCTTTTAGAAAAATTAACCGATGTTAGAATAAGTGACTTAAATACTGGAGCATCATCGCCCTTTCCACCGCTTAATAATTTGACCGCCATGGAAAATCTAGAGCTGAGTAATTGCCATATAACAGGAGTGCTGCCTGGTTATTTGGCAGAGATGATATCTTTGGAACTCCTAGATCTTAGCTTTAACAAAATAAGTGGGCCGATTCCACTCAGTTATCGTAGTCTTGTACCAAGAGTGGCGAAAATATTTTTAACTGGAAACTTGCTAAATGGAACAGTGCCGGATTGGATTCTACAGGCAGGACAAAACATGGATTTCTCTTATAATAAATTTGAACCACTTTCTTTGAGTTCAGGCTGTCGAATAAATAACATGAACTTCTTTGCTAGCTCTTGGCTAGACAATAGTTTTAAGCTTGTGTCTTGTTTGCGAAATCGCACATGTGAAAAAGTTAAGCACCATCTCCATATAAATTGTGGCGGTAAGGAAGAAACCATTGATGGTGTTACGTTTGAAGGAGATGAAAGCATAGGCGGACCATCACAGTTTCTTTTAAGCAAAACAAATTGGGCAATTAGCATTACTGGCGCTTTTAGAGATGATGGTCGTAAATCAGATAACTATGTTATTGTCAATTCATCTTCATTGTCTATGAAAAATCCCAAACTCTATGAGACCGCTCGACTTACTCCAATCACTGTTACATACTATGTGTATTGCATGGCACCTGCAAACTACACAATAAGTCTCCATTTTGCAGAAATAATGTTTACTAATGATACAACTTATAAGAGTCTCGGAAGACGCATATTTGATGTCTATGTGCAGGGAAGGCGACTGCTGAAGGATTTTAATATTGTAGATGCTGCCGGTGGTGTAGGTAAAGCTTTCATACAAAAAATTCCCGTCACCATTACTGAGGGTACTTTGGAGATACGATTTCATTGGGCTGGGAAAGGTACAACTAATATTCCTACAGGGGGAACCTATGGTCCTTTGATTTCTGCCATTTCAGTAGAATCCAATATTCCTGAGTCTAACCCTCCATTAGAAGGCAAAAATACCTTACCTTCAGGCGCAATTGTTGGAATTTCAACTGCAGTAGTCTTGTTTATAGTTTTGACTCTTGGAACTTTATGGTGGAGAGGGTGTCTTGGAATGAAATGTAAACATCCACAAGCTTTGGAGGGTCTGAATATGCAAGTTGGTTCATTTACTTTAAAGCAAATCTCAACCGCCACAAATAATTTTGACGCTTCCAATAAGTTAGGGGAAGGTGGTTTTGGATCGGTTTACAAGGGTATTCTCTTTGATGGCACTGTGATTGCAGTGAAGCAACTTTCTTCAAAGTCAGTGCAAGGAAAACGTGAATTTGTAAATGAGATAAGCATGATATCTTCTTTGCAACATCCATATCTAGTAAAGTTGTATGGATGTTGCACCGAAGGAGATCAACTCTTGCTAGTATATGAATATATGGAAAATAATAATCTCGCCCGAGGCCTGTTCGGACCTCAAGGATGTCAATTGGAATTGAATTGGCCAACGAGACAAAAAATTTGTATTGGTATTGCCAAAGGTTTGACTTTTCTTCATGAGGAATCAGGATTGAAGATTGTTCACCGAGACATCAAAGGTACTAATGTATTGTTAGACGAAAAGCTCAATCCAAAGATATCTGACTTCGGTTTGGCAAAGCTTGATGAAGAAGAAAATACCCATATGACCACTCGAGTCGCTGGAACATTTGGATATATAGCTCCAGAATATGCAACACGAGGCTATTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTGACATTGGAAATAGTTAGCGGAAGGGGCAACAGTATATACCGTTCAAAGGATAAGTGCCTTTATCTTCTTGATTGGGCACTTATGCTAAAAGAGGAAGGCAATTTAATGGAACTAGTTGATCCAAGATTAGGCTGCAATTTCAACCAAGGTGAGGCTCTGGCAATGATCAACATTGCTCTCCTCTGCACCAATGTCTCTCCTTCGGCGAGACCCATCATGTCCTCAGTGGTGAGCATGCTGGAAGGCAAGGCTGCAATTGAGGAATTGGTTGCAAATCCAAATGACTTAAGAGAAGAGATCAACGCAATGTGGAACCTTGTGCAGCAGAACCATAAAATAATTGACAATGATGACCAAACAAAGAGTTCATCATCTATGAACGTTCTATGTACCAGTTCTTCGACGATGATATAG 3006 40.69 MSLVASPILVAASLVVFCSLTALTLGWLPLEEADGLRYVGKTLGRKDWNFSAEEDPCGAQFSWQSRNDDIPTTDLKFNSTIICSPCNATAPCHITHIILKGQNLAGTLPSDLVRLPYLEELDLSRNYLSGQIPPQWGNTKLLKISLTGNRLTGFIPKEIGNITTLKDLVLESNHFSGRLPSTLGNLSNLEKLYLASNNFTGELPTSLGMLTTLLKFRISDNNFVGQVPNFIRNWVNINRIVIQASGLKGPIPSEIGLLEKLTDVRISDLNTGASSPFPPLNNLTAMENLELSNCHITGVLPGYLAEMISLELLDLSFNKISGPIPLSYRSLVPRVAKIFLTGNLLNGTVPDWILQAGQNMDFSYNKFEPLSLSSGCRINNMNFFASSWLDNSFKLVSCLRNRTCEKVKHHLHINCGGKEETIDGVTFEGDESIGGPSQFLLSKTNWAISITGAFRDDGRKSDNYVIVNSSSLSMKNPKLYETARLTPITVTYYVYCMAPANYTISLHFAEIMFTNDTTYKSLGRRIFDVYVQGRRLLKDFNIVDAAGGVGKAFIQKIPVTITEGTLEIRFHWAGKGTTNIPTGGTYGPLISAISVESNIPESNPPLEGKNTLPSGAIVGISTAVVLFIVLTLGTLWWRGCLGMKCKHPQALEGLNMQVGSFTLKQISTATNNFDASNKLGEGGFGSVYKGILFDGTVIAVKQLSSKSVQGKREFVNEISMISSLQHPYLVKLYGCCTEGDQLLLVYEYMENNNLARGLFGPQGCQLELNWPTRQKICIGIAKGLTFLHEESGLKIVHRDIKGTNVLLDEKLNPKISDFGLAKLDEEENTHMTTRVAGTFGYIAPEYATRGYLTDKADVYSFGIVTLEIVSGRGNSIYRSKDKCLYLLDWALMLKEEGNLMELVDPRLGCNFNQGEALAMINIALLCTNVSPSARPIMSSVVSMLEGKAAIEELVANPNDLREEINAMWNLVQQNHKIIDNDDQTKSSSSMNVLCTSSSTMI 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36984638 37012935 - Sed0010313.1 Sed05g2494 715120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2494 1001 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 956 - -
Sed05g2494 1001 Pfam Malectin domain 411 593 IPR021720 -
Sed05g2494 1001 ProSitePatterns Protein kinases ATP-binding region signature. 679 701 IPR017441 GO:0005524(InterPro)
Sed05g2494 1001 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 643 748 - -
Sed05g2494 1001 SUPERFAMILY L domain-like 69 352 - -
Sed05g2494 1001 SUPERFAMILY Protein kinase-like (PK-like) 656 945 IPR011009 -
Sed05g2494 1001 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2494 1001 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Sed05g2494 1001 Pfam Leucine Rich Repeat 309 330 IPR001611 GO:0005515(InterPro)
Sed05g2494 1001 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Sed05g2494 1001 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Sed05g2494 1001 Gene3D Ribonuclease Inhibitor 274 405 IPR032675 -
Sed05g2494 1001 ProSiteProfiles Protein kinase domain profile. 673 954 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2494 1001 Gene3D Ribonuclease Inhibitor 48 203 IPR032675 -
Sed05g2494 1001 FunFam Nuclear pore complex protein NUP107 46 205 - -
Sed05g2494 1001 Gene3D Transferase(Phosphotransferase) domain 1 749 963 - -
Sed05g2494 1001 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 598 - -
Sed05g2494 1001 Pfam Protein tyrosine and serine/threonine kinase 676 943 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2494 1001 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 964 IPR051824 -
Sed05g2494 1001 SMART serkin_6 673 942 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2494 1001 Gene3D - 408 598 - -
Sed05g2494 1001 Gene3D Phosphorylase Kinase; domain 1 642 748 - -
Sed05g2494 1001 CDD STKc_IRAK 679 946 - -
Sed05g2494 1001 Gene3D Ribonuclease Inhibitor 204 273 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2489 Sed-Chr4:37927441 Sed05g2494 Sed-Chr5:36984638 7.40E-270 dispersed
Sed05g2494 Sed-Chr5:36984638 Sed05g2496 Sed-Chr5:36984638 0.00E+00 dispersed
Sed05g2493 Sed-Chr5:36943206 Sed05g2494 Sed-Chr5:36984638 0.00E+00 tandem
Sed05g2494 Sed-Chr5:36984638 Sed05g2495 Sed-Chr5:36984638 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79218 PF07714 PK_Tyr_Ser-Thr 2.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2494 - - - 0.0