Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2495 ATGTCGTTGGTTGCATCTCCAATTCTTGTTGCTGCATCCCTCGTTGTTTTTTGTTCTCTCACTGCTCTCACTCTTGGCTGGTTGCCTCTTGAAGAAGCTGATGGACTAAGGTACGTGGGTAAGACATTGGGTAGGAAAGATTGGAATTTCAGTGCAGAAGAAGATCCATGCGGCGCACAGTTTAGTTGGCAATCTCGAAACGACGATATCCCGACCACGGACCTCAAGTTCAACAGTACTATCATCTGCAGCCCTTGTAATGCTACTGCCCCTTGCCACATCACCCATATAATTCTGAAGGGGCAGAATTTGGCGGGCACACTTCCATCTGATCTCGTCCGATTGCCTTACCTGGAGGAACTCGGCCAAATTCCTCCCCAATGGGGCAACACGAAGCTTCTCAAAATTTCGCTAACTGGAAATCGGTTGACGGGTTTTATTCCGAAAGAGATTGGAAATATCACTACTCTTAAGGATTTGGTCCTAGAATCCAATCACTTTTCAGGAAGGTTGCCTTCAACCCTTGGAAATTTGTCCAACTTGGAAAAATTATACCTTGCCTCTAACAACTTCACTGGTGAGCTACCGACTTCATTGGGAATGCTAACCACTTTGTTGAAATTCCGAATCAGCGACAACAACTTTGTTGGACAGGTACCCAATTTCATACGGAATTGGGTAAATATTAATCGAATAGTGATTCAAGCAAGTGGGTTGAAAGGGCCTATTCCTTCTGAAATCGGTCTTTTAGAAAAATTAACCGATGTTAGAATAAGTGACTTAAATACTGGAGCATCATCGCCCTTTCCACCGCTTAATAATTTGACCGCCATGGAAAATCTAGAGCTGAGTAATTGCCATATAACAGGAGTGCTGCCTGGTTATTTGGCAGAGATGATATCTTTGGAACTCCTAGATCTTAGCTTTAACAAAATAAGTGGGCCGATTCCACTCAGTTATCGTAGTCTTGTACCAAGAGTGGCGAAAATATTTTTAACTGGAAACTTGCTAAATGGAACAGTGCCGGATTGGATTCTACAGGCAGGACAAAACATGGATTTCTCTTATAATAAATTTGAACCACTTTCTTTGAGTTCAGGCTGTCGAATAAATAACATGAACTTCTTTGCTAGCTCTTGGCTAGACAATAGTTTTAAGCTTGTGTCTTGTTTGCGAAATCGCACATGTGAAAAAGTTAAGCACCATCTCCATATAAATTGTGGCGGTAAGGAAGAAACCATTGATGGTGTTACGTTTGAAGGAGATGAAAGCATAGGCGGACCATCACAGTTTCTTTTAAGCAAAACAAATTGGGCAATTAGCATTACTGGCGCTTTTAGAGATGATGGTCGTAAATCAGATAACTATGTTATTGTCAATTCATCTTCATTGTCTATGAAAAATCCCAAACTCTATGAGACCGCTCGACTTACTCCAATCACTGTTACATACTATGTGTATTGCATGGCACCTGCAAACTACACAATAAGTCTCCATTTTGCAGAAATAATGTTTACTAATGATACAACTTATAAGAGTCTCGGAAGACGCATATTTGATGTCTATGTGCAGGGAAGGCGACTGCTGAAGGATTTTAATATTGTAGATGCTGCCGGTGGTGTAGGTAAAGCTTTCATACAAAAAATTCCCGTCACCATTACTGAGGGTACTTTGGAGATACGATTTCATTGGGCTGGGAAAGGTACAACTAATATTCCTACAGGGGGAACCTATGGTCCTTTGATTTCTGCCATTTCAGTAGAATCCAATATTCCTGAGTCTAACCCTCCATTAGAAGGCAAAAATACCTTACCTTCAGGCGCAATTGTTGGAATTTCAACTGCAGTAGTCTTGTTTATAGTTTTGACTCTTGGAACTTTATGGTGGAGAGGGTGTCTTGGAATGAAATGTAAACATCCACAAGCTTTGGAGGGTCTGAATATGCAAGTTGGTTCATTTACTTTAAAGCAAATCTCAACCGCCACAAATAATTTTGACGCTTCCAATAAGTTAGGGGAAGGTGGTTTTGGATCGGTTTACAAGGGTATTCTCTTTGATGGCACTGTGATTGCAGTGAAGCAACTTTCTTCAAAGTCAGTGCAAGGAAAACGTGAATTTGTAAATGAGATAAGCATGATATCTTCTTTGCAACATCCATATCTAGTAAAGTTGTATGGATGTTGCACCGAAGGAGATCAACTCTTGCTAGTATATGAATATATGGAAAATAATAATCTCGCCCGAGGCCTGTTCGGACCTCAAGGATGTCAATTGGAATTGAATTGGCCAACGAGACAAAAAATTTGTATTGGTATTGCCAAAGGTTTGACTTTTCTTCATGAGGAATCAGGATTGAAGATTGTTCACCGAGACATCAAAGGTACTAATGTATTGTTAGACGAAAAGCTCAATCCAAAGATATCTGACTTCGGTTTGGCAAAGCTTGATGAAGAAGAAAATACCCATATGACCACTCGAGTCGCTGGAACATTTGGATATATAGCTCCAGAATATGCAACACGAGGCTATTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTGACATTGGAAATAGTTAGCGGAAGGGGCAACAGTATATACCGTTCAAAGGATAAGTGCCTTTATCTTCTTGATTGGGCACTTATGCTAAAAGAGGAAGGCAATTTAATGGAACTAGTTGATCCAAGATTAGGCTGCAATTTCAACCAAGGTGAGGCTCTGGCAATGATCAACATTGCTCTCCTCTGCACCAATGTCTCTCCTTCGGCGAGACCCATCATGTCCTCAGTGGTGAGCATGCTGGAAGGCAAGGCTGCAATTGAGGAATTGGTTGCAAATCCAAATGACTTAAGAGAAGAGATCAACGCAATGTGGAACCTTGTGCAGCAGAACCATAAAATAATTGACAATGATGACCAAACAAAGAGTTCATCATCTATGAACGTTCTATGTACCAGTTCTTCGACGATGATATAG 2982 40.74 MSLVASPILVAASLVVFCSLTALTLGWLPLEEADGLRYVGKTLGRKDWNFSAEEDPCGAQFSWQSRNDDIPTTDLKFNSTIICSPCNATAPCHITHIILKGQNLAGTLPSDLVRLPYLEELGQIPPQWGNTKLLKISLTGNRLTGFIPKEIGNITTLKDLVLESNHFSGRLPSTLGNLSNLEKLYLASNNFTGELPTSLGMLTTLLKFRISDNNFVGQVPNFIRNWVNINRIVIQASGLKGPIPSEIGLLEKLTDVRISDLNTGASSPFPPLNNLTAMENLELSNCHITGVLPGYLAEMISLELLDLSFNKISGPIPLSYRSLVPRVAKIFLTGNLLNGTVPDWILQAGQNMDFSYNKFEPLSLSSGCRINNMNFFASSWLDNSFKLVSCLRNRTCEKVKHHLHINCGGKEETIDGVTFEGDESIGGPSQFLLSKTNWAISITGAFRDDGRKSDNYVIVNSSSLSMKNPKLYETARLTPITVTYYVYCMAPANYTISLHFAEIMFTNDTTYKSLGRRIFDVYVQGRRLLKDFNIVDAAGGVGKAFIQKIPVTITEGTLEIRFHWAGKGTTNIPTGGTYGPLISAISVESNIPESNPPLEGKNTLPSGAIVGISTAVVLFIVLTLGTLWWRGCLGMKCKHPQALEGLNMQVGSFTLKQISTATNNFDASNKLGEGGFGSVYKGILFDGTVIAVKQLSSKSVQGKREFVNEISMISSLQHPYLVKLYGCCTEGDQLLLVYEYMENNNLARGLFGPQGCQLELNWPTRQKICIGIAKGLTFLHEESGLKIVHRDIKGTNVLLDEKLNPKISDFGLAKLDEEENTHMTTRVAGTFGYIAPEYATRGYLTDKADVYSFGIVTLEIVSGRGNSIYRSKDKCLYLLDWALMLKEEGNLMELVDPRLGCNFNQGEALAMINIALLCTNVSPSARPIMSSVVSMLEGKAAIEELVANPNDLREEINAMWNLVQQNHKIIDNDDQTKSSSSMNVLCTSSSTMI 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36984638 37012935 - Sed0010313.2 Sed05g2495 715121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2495 993 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 400 590 - -
Sed05g2495 993 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 635 740 - -
Sed05g2495 993 Gene3D Ribonuclease Inhibitor 46 220 IPR032675 -
Sed05g2495 993 Pfam Malectin domain 403 585 IPR021720 -
Sed05g2495 993 Gene3D Transferase(Phosphotransferase) domain 1 741 955 - -
Sed05g2495 993 Gene3D Phosphorylase Kinase; domain 1 634 740 - -
Sed05g2495 993 SMART serkin_6 665 934 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2495 993 SUPERFAMILY Protein kinase-like (PK-like) 648 937 IPR011009 -
Sed05g2495 993 FunFam Putative LRR receptor-like serine/threonine-protein kinase 741 948 - -
Sed05g2495 993 CDD STKc_IRAK 671 938 - -
Sed05g2495 993 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2495 993 Pfam Protein tyrosine and serine/threonine kinase 668 935 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2495 993 Gene3D Ribonuclease Inhibitor 221 398 IPR032675 -
Sed05g2495 993 Pfam Leucine Rich Repeat 301 322 IPR001611 GO:0005515(InterPro)
Sed05g2495 993 Pfam Leucine Rich Repeat 157 178 IPR001611 GO:0005515(InterPro)
Sed05g2495 993 Pfam Leucine Rich Repeat 180 201 IPR001611 GO:0005515(InterPro)
Sed05g2495 993 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 956 IPR051824 -
Sed05g2495 993 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524(InterPro)
Sed05g2495 993 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 125 207 - -
Sed05g2495 993 SUPERFAMILY L domain-like 69 344 - -
Sed05g2495 993 Gene3D - 400 590 - -
Sed05g2495 993 ProSiteProfiles Protein kinase domain profile. 665 946 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2493 Sed-Chr5:36943206 Sed05g2495 Sed-Chr5:36984638 0.00E+00 dispersed
Sed05g2495 Sed-Chr5:36984638 Sed05g2510 Sed-Chr5:37165072 8.1e-314 dispersed
Sed05g2494 Sed-Chr5:36984638 Sed05g2495 Sed-Chr5:36984638 0.00E+00 tandem
Sed05g2495 Sed-Chr5:36984638 Sed05g2496 Sed-Chr5:36984638 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79219 PF07714 PK_Tyr_Ser-Thr 2.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2495 - - - 0.0