Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2496 ATGTCGTTGGTTGCATCTCCAATTCTTGTTGCTGCATCCCTCGTTGTTTTTTGTTCTCTCACTGCTCTCACTCTTGGCTGGTTGCCTCTTGAAGAAGCTGATGGACTAAGGTACGTGGGTAAGACATTGGGTAGGAAAGATTGGAATTTCAGTGCAGAAGAAGATCCATGCGGCGCACAGTTTAGTTGGCAATCTCGAAACGACGATATCCCGACCACGGACCTCAAGTTCAACAGTACTATCATCTGCAGCCCTTGTAATGCTACTGCCCCTTGCCACATCACCCATATAATTCTGAAGGGGCAGAATTTGGCGGGCACACTTCCATCTGATCTCGTCCGATTGCCTTACCTGGAGGAACTTGATCTCTCTCGAAATTATCTTAGCGGCCAAATTCCTCCCCAATGGGGCAACACGAAGCTTCTCAAAATTTCGCTAACTGGAAATCGGTTGACGGGTTTTATTCCGAAAGAGATTGGAAATATCACTACTCTTAAGGATTTGGTCCTAGAATCCAATCACTTTTCAGGAAGGTTGCCTTCAACCCTTGGAAATTTGTCCAACTTGGAAAAATTATACCTTGCCTCTAACAACTTCACTGGTGAGCTACCGACTTCATTGGGAATGCTAACCACTTTGTTGAAATTCCGAATCAGCGACAACAACTTTGTTGGACAGGTACCCAATTTCATACGGAATTGGGTAAATATTAATCGAATAGTGATTCAAGCAAGTGGGTTGAAAGGGCCTATTCCTTCTGAAATCGGTCTTTTAGAAAAATTAACCGATGTTAGAATAAGTGACTTAAATACTGGAGCATCATCGCCCTTTCCACCGCTTAATAATTTGACCGCCATGGAAAATCTAGAGCTGAGTAATTGCCATATAACAGGAGTGCTGCCTGGTTATTTGGCAGAGATGATATCTTTGGAACTCCTAGATCTTAGCTTTAACAAAATAAGTGGGCCGATTCCACTCAGTTATCGTAGTCTTGTACCAAGAGTGGCGAAAATATTTTTAACTGGAAACTTGCTAAATGGAACAGTGCCGGATTGGATTCTACAGGCAGGACAAAACATGGATTTCTCTTATAATAAATTTGAACCACTTTCTTTGAGTTCAGGCTGTCGAATAAATAACATGAACTTCTTTGCTAGCTCTTGGCTAGACAATAGTTTTAAGCTTGTGTCTTGTTTGCGAAATCGCACATGTGAAAAAGTTAAGCACCATCTCCATATAAATTGTGGCGGTAAGGAAGAAACCATTGATGGTGTTACGTTTGAAGGAGATGAAAGCATAGGCGGACCATCACAGTTTCTTTTAAGCAAAACAAATTGGGCAATTAGCATTACTGGCGCTTTTAGAGATGATGGTCGTAAATCAGATAACTATGTTATTGTCAATTCATCTTCATTGTCTATGAAAAATCCCAAACTCTATGAGACCGCTCGACTTACTCCAATCACTGTTACATACTATGTGTATTGCATGGCACCTGCAAACTACACAATAAGTCTCCATTTTGCAGAAATAATGTTTACTAATGATACAACTTATAAGAGTCTCGGAAGACGCATATTTGATGTCTATGTGCAGGGAAGGCGACTGCTGAAGGATTTTAATATTGTAGATGCTGCCGGTGGTGTAGGTAAAGCTTTCATACAAAAAATTCCCGTCACCATTACTGAGGGTACTTTGGAGATACGATTTCATTGGGCTGGGAAAGAGTCTAACCCTCCATTAGAAGGCAAAAATACCTTACCTTCAGGCGCAATTGTTGGAATTTCAACTGCAGTAGTCTTGTTTATAGTTTTGACTCTTGGAACTTTATGGTGGAGAGGGTGTCTTGGAATGAAATGTAAACATCCACAAGCTTTGGAGGGTCTGAATATGCAAGTTGGTTCATTTACTTTAAAGCAAATCTCAACCGCCACAAATAATTTTGACGCTTCCAATAAGTTAGGGGAAGGTGGTTTTGGATCGGTTTACAAGGGTATTCTCTTTGATGGCACTGTGATTGCAGTGAAGCAACTTTCTTCAAAGTCAGTGCAAGGAAAACGTGAATTTGTAAATGAGATAAGCATGATATCTTCTTTGCAACATCCATATCTAGTAAAGTTGTATGGATGTTGCACCGAAGGAGATCAACTCTTGCTAGTATATGAATATATGGAAAATAATAATCTCGCCCGAGGCCTGTTCGGACCTCAAGGATGTCAATTGGAATTGAATTGGCCAACGAGACAAAAAATTTGTATTGGTATTGCCAAAGGTTTGACTTTTCTTCATGAGGAATCAGGATTGAAGATTGTTCACCGAGACATCAAAGGTACTAATGTATTGTTAGACGAAAAGCTCAATCCAAAGATATCTGACTTCGGTTTGGCAAAGCTTGATGAAGAAGAAAATACCCATATGACCACTCGAGTCGCTGGAACATTTGGATATATAGCTCCAGAATATGCAACACGAGGCTATTTAACTGATAAAGCAGATGTTTATAGCTTTGGTATTGTGACATTGGAAATAGTTAGCGGAAGGGGCAACAGTATATACCGTTCAAAGGATAAGTGCCTTTATCTTCTTGATTGGGCACTTATGCTAAAAGAGGAAGGCAATTTAATGGAACTAGTTGATCCAAGATTAGGCTGCAATTTCAACCAAGGTGAGGCTCTGGCAATGATCAACATTGCTCTCCTCTGCACCAATGTCTCTCCTTCGGCGAGACCCATCATGTCCTCAGTGGTGAGCATGCTGGAAGGCAAGGCTGCAATTGAGGAATTGGTTGCAAATCCAAATGACTTAAGAGAAGAGATCAACGCAATGTGGAACCTTGTGCAGCAGAACCATAAAATAATTGACAATGATGACCAAACAAAGAGTTCATCATCTATGAACGTTCTATGTACCAGTTCTTCGACGATGATATAG 2931 40.7 MSLVASPILVAASLVVFCSLTALTLGWLPLEEADGLRYVGKTLGRKDWNFSAEEDPCGAQFSWQSRNDDIPTTDLKFNSTIICSPCNATAPCHITHIILKGQNLAGTLPSDLVRLPYLEELDLSRNYLSGQIPPQWGNTKLLKISLTGNRLTGFIPKEIGNITTLKDLVLESNHFSGRLPSTLGNLSNLEKLYLASNNFTGELPTSLGMLTTLLKFRISDNNFVGQVPNFIRNWVNINRIVIQASGLKGPIPSEIGLLEKLTDVRISDLNTGASSPFPPLNNLTAMENLELSNCHITGVLPGYLAEMISLELLDLSFNKISGPIPLSYRSLVPRVAKIFLTGNLLNGTVPDWILQAGQNMDFSYNKFEPLSLSSGCRINNMNFFASSWLDNSFKLVSCLRNRTCEKVKHHLHINCGGKEETIDGVTFEGDESIGGPSQFLLSKTNWAISITGAFRDDGRKSDNYVIVNSSSLSMKNPKLYETARLTPITVTYYVYCMAPANYTISLHFAEIMFTNDTTYKSLGRRIFDVYVQGRRLLKDFNIVDAAGGVGKAFIQKIPVTITEGTLEIRFHWAGKESNPPLEGKNTLPSGAIVGISTAVVLFIVLTLGTLWWRGCLGMKCKHPQALEGLNMQVGSFTLKQISTATNNFDASNKLGEGGFGSVYKGILFDGTVIAVKQLSSKSVQGKREFVNEISMISSLQHPYLVKLYGCCTEGDQLLLVYEYMENNNLARGLFGPQGCQLELNWPTRQKICIGIAKGLTFLHEESGLKIVHRDIKGTNVLLDEKLNPKISDFGLAKLDEEENTHMTTRVAGTFGYIAPEYATRGYLTDKADVYSFGIVTLEIVSGRGNSIYRSKDKCLYLLDWALMLKEEGNLMELVDPRLGCNFNQGEALAMINIALLCTNVSPSARPIMSSVVSMLEGKAAIEELVANPNDLREEINAMWNLVQQNHKIIDNDDQTKSSSSMNVLCTSSSTMI 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 36984638 37012935 - Sed0010313.3 Sed05g2496 715122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2496 976 Gene3D Phosphorylase Kinase; domain 1 617 723 - -
Sed05g2496 976 SMART serkin_6 648 917 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2496 976 Pfam Malectin domain 411 576 IPR021720 -
Sed05g2496 976 Gene3D Ribonuclease Inhibitor 204 273 IPR032675 -
Sed05g2496 976 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 588 - -
Sed05g2496 976 Gene3D Ribonuclease Inhibitor 48 203 IPR032675 -
Sed05g2496 976 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 618 723 - -
Sed05g2496 976 FunFam Nuclear pore complex protein NUP107 45 205 - -
Sed05g2496 976 Pfam Protein tyrosine and serine/threonine kinase 651 918 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2496 976 Gene3D - 408 586 - -
Sed05g2496 976 ProSitePatterns Protein kinases ATP-binding region signature. 654 676 IPR017441 GO:0005524(InterPro)
Sed05g2496 976 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 939 IPR051824 -
Sed05g2496 976 Gene3D Transferase(Phosphotransferase) domain 1 724 938 - -
Sed05g2496 976 Pfam Leucine Rich Repeat 165 186 IPR001611 GO:0005515(InterPro)
Sed05g2496 976 Pfam Leucine Rich Repeat 309 330 IPR001611 GO:0005515(InterPro)
Sed05g2496 976 Pfam Leucine Rich Repeat 118 138 IPR001611 GO:0005515(InterPro)
Sed05g2496 976 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515(InterPro)
Sed05g2496 976 SUPERFAMILY Protein kinase-like (PK-like) 631 920 IPR011009 -
Sed05g2496 976 ProSiteProfiles Protein kinase domain profile. 648 929 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2496 976 SUPERFAMILY L domain-like 69 352 - -
Sed05g2496 976 CDD STKc_IRAK 654 921 - -
Sed05g2496 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 770 782 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2496 976 Gene3D Ribonuclease Inhibitor 274 405 IPR032675 -
Sed05g2496 976 FunFam Putative LRR receptor-like serine/threonine-protein kinase 724 931 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2494 Sed-Chr5:36984638 Sed05g2496 Sed-Chr5:36984638 0.00E+00 dispersed
Sed05g2496 Sed-Chr5:36984638 Sed05g2510 Sed-Chr5:37165072 3.90E-303 dispersed
Sed05g2495 Sed-Chr5:36984638 Sed05g2496 Sed-Chr5:36984638 0.00E+00 tandem
Sed05g2496 Sed-Chr5:36984638 Sed05g2497 Sed-Chr5:37030116 2.00E-206 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79220 PF07714 PK_Tyr_Ser-Thr 2.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2496 - - - 0.0