Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2497 ATGGATTTTGCGGTTTCCAATTTTTCCAAAAGTGTTTGTGTTTTTCTCTTTGGGTTTCTGTTTTTCAGTTGCTTCCTCGGATTTGGATCGGATGCACAGCCTCTGCCTCAACAAGAAGTGAGAGCCCTCCAAGCAATATCTACAGAGCTAAGGAACTTAAACTGGAATGTGCACCAAAATTCTTGCATGAATGGAGATGGATTTTCAAATAGACTTATTGATGGTACAGATATTATGAGAGAAGTGAATTGCACTTGCAACACCACTTTGTGCAGAGTCACTAGCATTAGGCTAAAGGGTCTCAATCTAGCTGGAACTTTGCCAGCAGCATTTGCAAATCTGACTCAGCTGCAAGTGATAGATCTTACTCGCAATGTAATATCTGGCTCGATTCCAAGAGAGTTTGCTCAGATTCCTCTTGTTGATATATCCATGTTGGGAAATCGGCTAAGTGGTTCGATCCCTCCCGAAATTGGTGACATTGCTACACTTGAGATTCTGGTATTGGAAGACAATCTGCTTGGAGGAAACCTTCCCGGAAGCATCGGGAGACTAAGCCGCTTGAAAAGATTACTTCTTAGTGCAAATAATTTTACGGGGTCGATTCCGGATTCTTATGGACACTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATAATGTATCAGGAAAGCTACCCGAATTCATTGGAAATTGGACCAAACTTGAAAGATTGGATATCCAAGGAACTTCTATGGAGAACCCGATTCCTCGTGGCATATCCGAGTTGAAAAACTTAACCGAACTGAGGATAACTGATTTGAAGGGACCAGCTACAAGTTTTCCAAATTTGACTCAATTGACATCTTTAAAAGAATTGGTCTTAAGGAATTGCTTAATCGAAGATCGTATTCCTTCGTATATTGGAACGTTTAGTGGATTAAAAACTCTAGATCTAAGCTTCAATGAATTGAATGGTCCAATTCCAGACACATTTCAGAATCTAGAAAGAGTTACTCAGTTCATGTTTTTGACCAACAATTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTCAAAGGAGCATAGATTTATCTTACAACAACTTTACAGGGTCCCCTGTTTCTAGTTGTCAACAATCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAGTGACTGAAAATCTTAATTGGTGCTTGAGGAAGGATCTCCCTTGTCTTAGACAAAATCGATTTCATTCCTTGTTCATAAACTGTGGAGGCCAAAGAATGGAGCTTGATGGCAATGAATATGAAGAGGATGTTACTCCAGGGGGCAAGGCCAATTTCCTTTCTTTCTCAGACAGATGGGCTTATAGCAGTACTGGTGTTTTTCTAGGAAACGAGAATGCTGATTACAGAACAACAAACAACAACTTATCTATTCCAGGCATCTATCAAACAGCTCGACTTGCGCCTCTTTCACTCAAGTACTACGGACTTTGCTTAAGACGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTTTACAGATGACCAAACATTTAGCAGCTTAGGCGAGCGCATATTTGATATCTCAATTCAAGGAAATATGGTTAAAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTGTTGGTAAGAGCTTTATTTGGGAAGAGCCTAATGTTTTGGTGAATGGAAGTACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTCATATCTGGGATCACAGTGACACCAAACTTTGATGTGGACAATGGAATGCTATCAGCTGGAGCTATTGCTGGCATTGTTATTGGTAGCGTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAGGGTTATTTGGGAGGGAAAGAAGATGAGAACAGTGAGTTGAAGGCCCTAGATTTGCAGACTGGTTATTTCAGTTTGAGACAAATCAAAGGAGCCACCAACAACTTCGACCCAACACACAAGATAGGCGAGGGAGGTTTCGGTCCAGTGTACAAGGGAGTATTGTCAGATGGTACTACAATTGCAGTAAAGCAGCTATCAGCTAAATCAAGGCAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTACGGTTGTTGTATCGAAGGAAACCAGTTATTGCTCATATATGAGTATCTAGAAAACAATAGTCTAGCTCGTGCCCTTTTCGGCTCCGAGGAGCAACGACTACACTTGGATTGGTCGACAAGAATGAAGATATGCATAGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCACAGAGATATTAAGGCTACCAATGTGCTACTTGATAAAAGTTTGAATGCCAAGATTTCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAACACTCATATCAGCACAAGAATTGCTGGCACAATAGGCTATATGGCACCTGAATACGCAATGAGAGGATACCTTACCGATAAAGCAGATGTTTACAGCTTCGGAGTTGTGGCCTTAGAAATTGTCAGTGGAAAAAGCAACACAAATTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTAGACTGGGCTTATGTTCTCCAAGAGCAAGGAAACCTTTTGGAACTTGTTGATCCAACTCTTGGCTCACATTACCCAAAAGAAGAGGTCATGAGAATGATTCACATATCTCTTTTGTGCACAAATCCATCTCCAACTCTCAGGCCATCCATGTCCTCAGTTGTTAGCATGCTCGAAGGCAAAACTGCGGTCCAAGCGCCAATCATCATGCGCGGTGCAGCCGATCAAGATGCAAGGTTCAAAGCTTTTGAAAGGCTGTCACAAGATAGCGTAACAAGCTTTTCGACATCGTCGCAAGGCATTCCAATGCAGAAAAGCATGTTGATCGACGGGCCCTGGGTGGACTCGACTACTTCTACTCAAATCAAGGATGAGACTCAAGATTATTCTTCAACCAGAAACCTCATTTAG 3039 41.3 MDFAVSNFSKSVCVFLFGFLFFSCFLGFGSDAQPLPQQEVRALQAISTELRNLNWNVHQNSCMNGDGFSNRLIDGTDIMREVNCTCNTTLCRVTSIRLKGLNLAGTLPAAFANLTQLQVIDLTRNVISGSIPREFAQIPLVDISMLGNRLSGSIPPEIGDIATLEILVLEDNLLGGNLPGSIGRLSRLKRLLLSANNFTGSIPDSYGHLRNLTDFRIDGNNVSGKLPEFIGNWTKLERLDIQGTSMENPIPRGISELKNLTELRITDLKGPATSFPNLTQLTSLKELVLRNCLIEDRIPSYIGTFSGLKTLDLSFNELNGPIPDTFQNLERVTQFMFLTNNSLSGQVPSWILNSQRSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTVTENLNWCLRKDLPCLRQNRFHSLFINCGGQRMELDGNEYEEDVTPGGKANFLSFSDRWAYSSTGVFLGNENADYRTTNNNLSIPGIYQTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMFTDDQTFSSLGERIFDISIQGNMVKKDFNIMEEAGGVGKSFIWEEPNVLVNGSTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVDNGMLSAGAIAGIVIGSVVFVVLVLAVLRWKGYLGGKEDENSELKALDLQTGYFSLRQIKGATNNFDPTHKIGEGGFGPVYKGVLSDGTTIAVKQLSAKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGSEEQRLHLDWSTRMKICIGIAKGLAYLHEESVLKIVHRDIKATNVLLDKSLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLELVDPTLGSHYPKEEVMRMIHISLLCTNPSPTLRPSMSSVVSMLEGKTAVQAPIIMRGAADQDARFKAFERLSQDSVTSFSTSSQGIPMQKSMLIDGPWVDSTTSTQIKDETQDYSSTRNLI 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37030116 37040484 - Sed0015607.1 Sed05g2497 715123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2497 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Sed05g2497 1012 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Sed05g2497 1012 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515(InterPro)
Sed05g2497 1012 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515(InterPro)
Sed05g2497 1012 ProSiteProfiles Protein kinase domain profile. 663 945 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2497 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 202 269 - -
Sed05g2497 1012 SMART serkin_6 663 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2497 1012 Pfam Malectin domain 411 589 IPR021720 -
Sed05g2497 1012 Pfam Protein tyrosine and serine/threonine kinase 667 934 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2497 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase 739 946 - -
Sed05g2497 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 594 - -
Sed05g2497 1012 CDD STKc_IRAK 669 936 - -
Sed05g2497 1012 Gene3D Ribonuclease Inhibitor 266 396 IPR032675 -
Sed05g2497 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 368 - -
Sed05g2497 1012 Gene3D Ribonuclease Inhibitor 69 265 IPR032675 -
Sed05g2497 1012 SUPERFAMILY L domain-like 84 367 - -
Sed05g2497 1012 Gene3D - 409 594 - -
Sed05g2497 1012 SUPERFAMILY Protein kinase-like (PK-like) 647 938 IPR011009 -
Sed05g2497 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2497 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 959 IPR051824 -
Sed05g2497 1012 Gene3D Transferase(Phosphotransferase) domain 1 739 946 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2469 Sed-Chr4:37833935 Sed05g2497 Sed-Chr5:37030116 0.00E+00 dispersed
Sed04g2482 Sed-Chr4:37892077 Sed05g2497 Sed-Chr5:37030116 1.8e-310 dispersed
Sed04g2483 Sed-Chr4:37892077 Sed05g2497 Sed-Chr5:37030116 2.80E-224 dispersed
Sed04g2484 Sed-Chr4:37906030 Sed05g2497 Sed-Chr5:37030116 0.00E+00 dispersed
Sed04g2485 Sed-Chr4:37906030 Sed05g2497 Sed-Chr5:37030116 2.60E-290 dispersed
Sed05g2497 Sed-Chr5:37030116 Sed13g0631 Sed-Chr13:4306822 0.00E+00 dispersed
Sed05g2512 Sed-Chr5:37202043 Sed05g2497 Sed-Chr5:37030116 1.20E-35 dispersed
Sed05g2496 Sed-Chr5:36984638 Sed05g2497 Sed-Chr5:37030116 2.00E-206 tandem
Sed05g2497 Sed-Chr5:37030116 Sed05g2498 Sed-Chr5:37030718 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79221 PF07714 PK_Tyr_Ser-Thr 7.10E-51 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2497 - - - 0.0