Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2498 ATGGATTTTGCGGTTTCCAATTTTTCCAAAAGTGTTTGTGTTTTTCTCTTTGGGTTTCTGTTTTTCAGTTGCTTCCTCGGATTTGGATCGGATGCACAGCCTCTGCCTCAACAAGAAGTGAGAGCCCTCCAAGCAATATCTACAGAGCTAAGGAACTTAAACTGGAATGTGCACCAAAATTCTTGCATGAATGGAGATGGATTTTCAAATAGACTTATTGATGGTACAGATATTATGAGAGAAGTGAATTGCACTTGCAACACCACTTTGTGCAGAGTCACTAGCATTAGGCTAAAGGGTCTCAATCTAGCTGGAACTTTGCCAGCAGCATTTGCAAATCTGACTCAGCTGCAAGTGATAGATCTTACTCGCAATGTAATATCTGGCTCGATTCCAAGAGAGTTTGCTCAGATTCCTCTTGTTGATATATCCATGTTGGGAAATCGGCTAAGTGGTTCGATCCCTCCCGAAATTGGTGACATTGCTACACTTGAGATTCTGGTATTGGAAGACAATCTGCTTGGAGGAAACCTTCCCGGAAGCATCGGGAGACTAAGCCGCTTGAAAAGATTACTTCTTAGTGCAAATAATTTTACGGGGTCGATTCCGGATTCTTATGGACACTTGAGGAACTTGACTGATTTTCGGATAGATGGAAATAATGTATCAGGAAAGCTACCCGAATTCATTGGAAATTGGACCAAACTTGAAAGATTGGATATCCAAGGAACTTCTATGGAGAACCCGATTCCTCGTGGCATATCCGAGTTGAAAAACTTAACCGAACTGAGGATAACTGATTTGAAGGGACCAGCTACAAGTTTTCCAAATTTGACTCAATTGACATCTTTAAAAGAATTGGTCTTAAGGAATTGCTTAATCGAAGATCGTATTCCTTCGTATATTGGAACGTTTAGTGGATTAAAAACTCTAGATCTAAGCTTCAATGAATTGAATGGTCCAATTCCAGACACATTTCAGAATCTAGAAAGAGTTACTCAGTTCATGTTTTTGACCAACAATTCATTAAGTGGCCAAGTACCAAGCTGGATCTTGAACAGTCAAAGGAGCATAGATTTATCTTACAACAACTTTACAGGGTCCCCTGTTTCTAGTTGTCAACAATCTGATGTGAACTTGGTTTCAAGTTATTCAACTACAGTGACTGAAAATCTTAATTGGTGCTTGAGGAAGGATCTCCCTTGTCTTAGACAAAATCGATTTCATTCCTTGTTCATAAACTGTGGAGGCCAAAGAATGGAGCTTGATGGCAATGAATATGAAGAGGATGTTACTCCAGGGGGCAAGGCCAATTTCCTTTCTTTCTCAGACAGATGGGCTTATAGCAGTACTGGTGTTTTTCTAGGAAACGAGAATGCTGATTACAGAACAACAAACAACAACTTATCTATTCCAGGCATCTATCAAACAGCTCGACTTGCGCCTCTTTCACTCAAGTACTACGGACTTTGCTTAAGACGAGGAAGTTACAATGTGAAGCTTCACTTTGCTGAAATAATGTTTACAGATGACCAAACATTTAGCAGCTTAGGCGAGCGCATATTTGATATCTCAATTCAAGGAAATATGGTTAAAAAAGATTTTAACATAATGGAGGAAGCTGGTGGTGTTGGTAAGAGCTTTATTTGGGAAGAGCCTAATGTTTTGGTGAATGGAAGTACTCTTGAGATCCACTTGTATTGGGCTGGTAAAGGAACAACTGCCATTCCAAACAGAGGGGTTTATGGACCTCTCATATCTGGGATCACAGTGACACCAAACTTTGATGTGGACAATGGAATGCTATCAGCTGGAGCTATTGCTGGCATTGTTATTGGTAGCGTTGTGTTTGTTGTGTTGGTATTGGCTGTTCTTAGATGGAAGGGTTATTTGGGAGGGAAAGAAGATGAGAACAGTGAGTTGAAGGCCCTAGATTTGCAGACTGGTTATTTCAGTTTGAGACAAATCAAAGGAGCCACCAACAACTTCGACCCAACACACAAGATAGGCGAGGGAGGTTTCGGTCCAGTGTACAAGGGAGTATTGTCAGATGGTACTACAATTGCAGTAAAGCAGCTATCAGCTAAATCAAGGCAAGGAAACCGTGAATTCGTCACTGAGATCGGCATGATATCTGCATTACAACATCCAAATCTTGTTAAGCTTTACGGTTGTTGTATCGAAGGAAACCAGTTATTGCTCATATATGAGTATCTAGAAAACAATAGTCTAGCTCGTGCCCTTTTCGGCTCCGAGGAGCAACGACTACACTTGGATTGGTCGACAAGAATGAAGATATGCATAGGAATAGCAAAGGGATTGGCTTACCTTCATGAAGAATCTGTATTGAAAATTGTTCACAGAGATATTAAGGCTACCAATGTGCTACTTGATAAAAGTTTGAATGCCAAGATTTCTGATTTTGGGTTGGCTAGGCTTGATGAAGAGGAGAACACTCATATCAGCACAAGAATTGCTGGCACAATAGGCTATATGGCACCTGAATACGCAATGAGAGGATACCTTACCGATAAAGCAGATGTTTACAGCTTCGGAGTTGTGGCCTTAGAAATTGTCAGTGGAAAAAGCAACACAAATTACAGGCCAAAAGAGGAGTTTGTTTATCTTCTAGACTGGGTAACTGATTACTTTTTTCATAAAACACTGTTAACATAA 2676 40.4 MDFAVSNFSKSVCVFLFGFLFFSCFLGFGSDAQPLPQQEVRALQAISTELRNLNWNVHQNSCMNGDGFSNRLIDGTDIMREVNCTCNTTLCRVTSIRLKGLNLAGTLPAAFANLTQLQVIDLTRNVISGSIPREFAQIPLVDISMLGNRLSGSIPPEIGDIATLEILVLEDNLLGGNLPGSIGRLSRLKRLLLSANNFTGSIPDSYGHLRNLTDFRIDGNNVSGKLPEFIGNWTKLERLDIQGTSMENPIPRGISELKNLTELRITDLKGPATSFPNLTQLTSLKELVLRNCLIEDRIPSYIGTFSGLKTLDLSFNELNGPIPDTFQNLERVTQFMFLTNNSLSGQVPSWILNSQRSIDLSYNNFTGSPVSSCQQSDVNLVSSYSTTVTENLNWCLRKDLPCLRQNRFHSLFINCGGQRMELDGNEYEEDVTPGGKANFLSFSDRWAYSSTGVFLGNENADYRTTNNNLSIPGIYQTARLAPLSLKYYGLCLRRGSYNVKLHFAEIMFTDDQTFSSLGERIFDISIQGNMVKKDFNIMEEAGGVGKSFIWEEPNVLVNGSTLEIHLYWAGKGTTAIPNRGVYGPLISGITVTPNFDVDNGMLSAGAIAGIVIGSVVFVVLVLAVLRWKGYLGGKEDENSELKALDLQTGYFSLRQIKGATNNFDPTHKIGEGGFGPVYKGVLSDGTTIAVKQLSAKSRQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYLENNSLARALFGSEEQRLHLDWSTRMKICIGIAKGLAYLHEESVLKIVHRDIKATNVLLDKSLNAKISDFGLARLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTNYRPKEEFVYLLDWVTDYFFHKTLLT 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37030718 37040484 - Sed0015607.2 Sed05g2498 715124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2498 891 Gene3D - 409 594 - -
Sed05g2498 891 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 594 - -
Sed05g2498 891 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 368 - -
Sed05g2498 891 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 632 738 - -
Sed05g2498 891 Gene3D Phosphorylase Kinase; domain 1 631 738 - -
Sed05g2498 891 SUPERFAMILY Protein kinase-like (PK-like) 649 879 IPR011009 -
Sed05g2498 891 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 202 269 - -
Sed05g2498 891 Pfam Protein tyrosine and serine/threonine kinase 667 872 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2498 891 Gene3D Transferase(Phosphotransferase) domain 1 739 890 - -
Sed05g2498 891 Gene3D Ribonuclease Inhibitor 69 268 IPR032675 -
Sed05g2498 891 Gene3D Ribonuclease Inhibitor 269 397 IPR032675 -
Sed05g2498 891 CDD STKc_IRAK 669 880 - -
Sed05g2498 891 Pfam Leucine Rich Repeat 187 209 IPR001611 GO:0005515(InterPro)
Sed05g2498 891 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515(InterPro)
Sed05g2498 891 SUPERFAMILY L domain-like 84 367 - -
Sed05g2498 891 Pfam Malectin domain 411 589 IPR021720 -
Sed05g2498 891 SMART serkin_6 663 880 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2498 891 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 739 891 - -
Sed05g2498 891 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 19 880 IPR051824 -
Sed05g2498 891 ProSiteProfiles Protein kinase domain profile. 663 891 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2498 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 785 797 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2498 Sed-Chr5:37030718 Sed13g0631 Sed-Chr13:4306822 3.40E-277 dispersed
Sed05g2497 Sed-Chr5:37030116 Sed05g2498 Sed-Chr5:37030718 0.00E+00 tandem
Sed05g2498 Sed-Chr5:37030718 Sed05g2499 Sed-Chr5:37050159 1.30E-191 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79222 PF07714 PK_Tyr_Ser-Thr 6.20E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2498 - - - 0.0