Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2499 ATGTTCCTGGCTCGATCTCTCGCCGTCGTTTTCCTCACATCTCTCTGCTTCACCACCCTCGCTTCCGCCGCCACTCGCCTGCCGGCCGACGAAGTCGAGGCGTTGGCCGCGATCGGAAAGACATTGGGGAAGACGGACTGGAACTTCGACGCCGATCCATGCGGCGGCGTTGCCAGCGGTTGGATATCCAGTTCTTCGTTGGACCCTGGTTTTAATAACACTGTCTTCTGCGACTGCAACTTCCTCAACAAAACCGTCTGTCACGTTACTAACATTCTTCTAAAGGCGCAAAGCCTTCCAGGTACTCTGCCACCGGAAATTGGGAGGTTGCCTTTTCTGCAAGAACTTGATCTTACTCGCAACTATCTCAACGGCACAATTCCTCCAGAATGGGGTTCATCCAATCTTGTCAAAATTTCCCTTCTTGGAAATCGATTGACAGGCCCAATCCCAAAAGAGATTGGAAATATCAGCACTCTTGTAGATTTGGTTCTGGAAATGAATCATCTCTCTGGAAGTGTACCTGCAGAACTTGGAAATTTGCGCAACTTATCAAGATTACTACTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGCCAATACCTAAGTTTATACAAAATTTGACAAATCTTTCAAAAGTGGCCATTCAGGCAAGCGGGTTGAGTGGCCCAATTCCTTCTGAAATTGGACTTTTGACACAATTATCTGATTTGAGAATTAGTGACTTGAATGGAAATTCATCATCCTTTCCACCCCTTAATACTTTGACAAAATTGAAAGTCCTGATACTGAGGAATTGCAATATAACTGGCATGCTGCCCGGAAATCTTGGTGGGTTGACAGCATTGAAAACCTTAGATTTCAGCTTCAACAAAATTATTGGACAAGTACCTGGCACTTTTGAAGCTTTGAAAAAAGTGGATAGCATATATTTAACTGGAAACCTGCTTAATGGATCAGTACCCACTTGGATGCTACAGCAAGGAGAAAGCATAGATCTCTCTTATAACAAATTTAATAGTCAAAATGTTGGTTGTCAATCACGAAATTTAAACCTGTTTGCAAGCTCTTTAAAGGACAATAATTCCGGAACAGTTTCATGTTTACCGAGCACTTGCGGAAAGACATTTTACTCTCTCCATATCAACTGTGGTGGAAAAGAAGAATTAATTAACGGAACAACCAAATTTGATGACGACACAAATACCGGAAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACGGGTAGTTTTATGGACGATGATCGCACAACAGACGACTTTATTGCATTAAATGTATCTGCTCTCTCAATGCCAAATTCTGAGTTGTATTCAAGGGCACGAATTTCTCCGATATCTCTTACTTATTATGCATATTGCATGGGTAGTGGGAACTACACAGTGAGCCTCCATTTTGCTGAGATAGCGTTTACTAATGACAAAACATATAGAAGCCTTGGCAGGCGTCTATTTGATGTCTATGTTCAGGGAAAGCTCGAGATGAAAGATTTTAATATTGCAGATGCAGCTGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACTAATGGTACTATAGAGATCCGCCTATTCTGGGCTGGGAAGGGATCAAATGCAATCCCTGTAAGAGGAGTTTATGGTCCTTTGATTTCAGCCATTTCGGTAGATCCGGATTTTGTGCCACCATCAGAAGGTGGAAATCCCATATCTGCCGGTGTAGTGGTTGGAATTGTGGTTGCTGTGCTCTTGGTTATCATCTTGGTTCTTGGAGTGTTGTGGTGGAGAGGCTGCCTAACAAAGAAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTGCATTAAGACAAATTAAAGCTGCCACGAACAATTTTGATCCTGCCAATAAGATTGGGGAAGGTGGATTTGGTCCTGTCTACAAGGGTGTTCTTGCAGATGGCACTGTTATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAAATAGGCATGATATCTGCATTGCAGCACCCACATCTAGTGAAGCTCCATGGATGCTGTATTGAAGGAAATCAACTTTTGCTAATATATGAGTACCTGGAAAATAATAGTCTTGCTCGTGCTTTATTCGGACCCGAAGAATATCAAATAAAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGCATTGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTAAAAATTGTTCACCGAGACATCAAAGCTACCAATGTTCTACTCGATAAAAGTCTCAACCCCAAGATTTCTGACTTCGGTTTGGCGAAGCTTGATGAAGAAGAAAATACACACATCAGCACTCGGGTTGCTGGAACCTTTGGGTATATGGCACCAGAATACGCCATGCGAGGCTATTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATCGTGGCGTTAGAAATAGCCAGTGGACGAAACAACACAAGTTATCGAACCAAGGATGATTGCTTTTACCTTCTAGACCATGCTAATACTTTAAAAGAGAAAAACAGTTTGCTCGAGCTTGTTGATGCACGGTTAGGCTCGGACTTCAACAAGAGTGAGGCATTGACGATGATCAATGTTGCTCTCCAATGTACAAACATAATTTATACCGACAGACCTGCCATGTCATCAGTGGTGAGCATGCTAGAAGGGAAGGTTGCTTATAAAGAGGTGGTTTCAGACCCCAGTGTCTCAAAACAAGATATGAATGCAATGTGGAGCCAAATTTATCGCCAAAAAGGGGAAACAACGGGCGAGAGCCAGACGCAAAGTATGATGGATGGACCGTGGACGGGCTCTTCAACTTCTGCAAGTGATCTCTATCCCATCAACATTGATTCCAAGTACTTGGAGAACAGGAACTAG 3015 42.52 MFLARSLAVVFLTSLCFTTLASAATRLPADEVEALAAIGKTLGKTDWNFDADPCGGVASGWISSSSLDPGFNNTVFCDCNFLNKTVCHVTNILLKAQSLPGTLPPEIGRLPFLQELDLTRNYLNGTIPPEWGSSNLVKISLLGNRLTGPIPKEIGNISTLVDLVLEMNHLSGSVPAELGNLRNLSRLLLTSNNFSGELPSSLARIASLTDFRISDNHFTGPIPKFIQNLTNLSKVAIQASGLSGPIPSEIGLLTQLSDLRISDLNGNSSSFPPLNTLTKLKVLILRNCNITGMLPGNLGGLTALKTLDFSFNKIIGQVPGTFEALKKVDSIYLTGNLLNGSVPTWMLQQGESIDLSYNKFNSQNVGCQSRNLNLFASSLKDNNSGTVSCLPSTCGKTFYSLHINCGGKEELINGTTKFDDDTNTGKSSLFFQGGANWGFSNTGSFMDDDRTTDDFIALNVSALSMPNSELYSRARISPISLTYYAYCMGSGNYTVSLHFAEIAFTNDKTYRSLGRRLFDVYVQGKLEMKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFVPPSEGGNPISAGVVVGIVVAVLLVIILVLGVLWWRGCLTKKSTLEQELKGLDLGTGSFALRQIKAATNNFDPANKIGEGGFGPVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEGNQLLLIYEYLENNSLARALFGPEEYQIKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKSLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIASGRNNTSYRTKDDCFYLLDHANTLKEKNSLLELVDARLGSDFNKSEALTMINVALQCTNIIYTDRPAMSSVVSMLEGKVAYKEVVSDPSVSKQDMNAMWSQIYRQKGETTGESQTQSMMDGPWTGSSTSASDLYPINIDSKYLENRN 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37050159 37060652 + Sed0016037.1 Sed05g2499 715125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2499 1004 Gene3D Ribonuclease Inhibitor 192 268 IPR032675 -
Sed05g2499 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 783 795 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2499 1004 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 949 IPR051824 -
Sed05g2499 1004 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 630 736 - -
Sed05g2499 1004 ProSiteProfiles Protein kinase domain profile. 661 947 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2499 1004 MobiDBLite consensus disorder prediction 963 983 - -
Sed05g2499 1004 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515(InterPro)
Sed05g2499 1004 CDD STKc_IRAK 667 934 - -
Sed05g2499 1004 SUPERFAMILY Protein kinase-like (PK-like) 646 953 IPR011009 -
Sed05g2499 1004 Gene3D Ribonuclease Inhibitor 29 191 IPR032675 -
Sed05g2499 1004 FunFam Putative LRR receptor-like serine/threonine-protein kinase 737 944 - -
Sed05g2499 1004 SUPERFAMILY L domain-like 61 391 - -
Sed05g2499 1004 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 398 589 - -
Sed05g2499 1004 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 265 - -
Sed05g2499 1004 Gene3D Transferase(Phosphotransferase) domain 1 737 946 - -
Sed05g2499 1004 SMART serkin_6 661 932 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2499 1004 Pfam Protein tyrosine and serine/threonine kinase 665 931 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2499 1004 Gene3D Ribonuclease Inhibitor 269 384 IPR032675 -
Sed05g2499 1004 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515(InterPro)
Sed05g2499 1004 Pfam Leucine Rich Repeat 113 132 IPR001611 GO:0005515(InterPro)
Sed05g2499 1004 Pfam Malectin domain 400 584 IPR021720 -
Sed05g2499 1004 Gene3D - 398 588 - -
Sed05g2499 1004 Gene3D Phosphorylase Kinase; domain 1 628 736 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2491 Sed-Chr5:36926126 Sed05g2499 Sed-Chr5:37050159 4.80E-252 dispersed
Sed05g2492 Sed-Chr5:36926126 Sed05g2499 Sed-Chr5:37050159 4.80E-252 dispersed
Sed05g2499 Sed-Chr5:37050159 Sed05g2502 Sed-Chr5:37094130 0.00E+00 dispersed
Sed05g2498 Sed-Chr5:37030718 Sed05g2499 Sed-Chr5:37050159 1.30E-191 tandem
Sed05g2499 Sed-Chr5:37050159 Sed05g2500 Sed-Chr5:37050159 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79223 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2499 - - - 0.0