Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2500 ATGTTCCTGGCTCGATCTCTCGCCGTCGTTTTCCTCACATCTCTCTGCTTCACCACCCTCGCTTCCGCCGCCACTCGCCTGCCGGCCGACGAAGTCGAGGCGTTGGCCGCGATCGGAAAGACATTGGGGAAGACGGACTGGAACTTCGACGCCGATCCATGCGGCGGCGTTGCCAGCGGTTGGATATCCAGTTCTTCGTTGGACCCTGGTTTTAATAACACTGTCTTCTGCGACTGCAACTTCCTCAACAAAACCGTCTGTCACGTTACTAACATTCTTCTAAAGGCGCAAAGCCTTCCAGGTACTCTGCCACCGGAAATTGGGAGGTTGCCTTTTCTGCAAGAACTTGATCTTACTCGCAACTATCTCAACGGCACAATTCCTCCAGAATGGGGTTCATCCAATCTTGTCAAAATTTCCCTTCTTGGAAATCGATTGACAGGCCCAATCCCAAAAGAGATTGGAAATATCAGCACTCTTGTAGATTTGGTTCTGGAAATGAATCATCTCTCTGGAAGTGTACCTGCAGAACTTGGAAATTTGCGCAACTTATCAAGATTACTACTTACCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGGATAGCCTCATTGACGGACTTTCGAATTAGTGATAATCACTTCACAGGGCCAATACCTAAGTTTATACAAAATTTGACAAATCTTTCAAAAGTGGCCATTCAGGCAAGCGGGTTGAGTGGCCCAATTCCTTCTGAAATTGGACTTTTGACACAATTATCTGATTTGAGAATTAGTGACTTGAATGGAAATTCATCATCCTTTCCACCCCTTAATACTTTGACAAAATTGAAAGTCCTGATACTGAGGAATTGCAATATAACTGGCATGCTGCCCGGAAATCTTGGTGGGTTGACAGCATTGAAAACCTTAGATTTCAGCTTCAACAAAATTATTGGACAAGTACCTGGCACTTTTGAAGCTTTGAAAAAAGTGGATAGCATATATTTAACTGGAAACCTGCTTAATGGATCAGTACCCACTTGGATGCTACAGCAAGGAGAAAGCATAGATCTCTCTTATAACAAATTTAATAGTCAAAATGTTGGTTGTCAATCACGAAATTTAAACCTGTTTGCAAGCTCTTTAAAGGACAATAATTCCAGCGGAACAGTTTCATGTTTACCGAGCACTTGCGGAAAGACATTTTACTCTCTCCATATCAACTGTGGTGGAAAAGAAGAATTAATTAACGGAACAACCAAATTTGATGACGACACAAATACCGGAAAATCATCATTGTTTTTTCAAGGTGGAGCAAATTGGGGATTTAGCAACACGGGTAGTTTTATGGACGATGATCGCACAACAGACGACTTTATTGCATTAAATGTATCTGCTCTCTCAATGCCAAATTCTGAGTTGTATTCAAGGGCACGAATTTCTCCGATATCTCTTACTTATTATGCATATTGCATGGGTAGTGGGAACTACACAGTGAGCCTCCATTTTGCTGAGATAGCGTTTACTAATGACAAAACATATAGAAGCCTTGGCAGGCGTCTATTTGATGTCTATGTTCAGGGAAAGCTCGAGATGAAAGATTTTAATATTGCAGATGCAGCTGGTGGTGTTGGCAAACCTTTTGTAAAGAAATTCACTGTTTCTGTGACTAATGGTACTATAGAGATCCGCCTATTCTGGGCTGGGAAGGGATCAAATGCAATCCCTGTAAGAGGAGTTTATGGTCCTTTGATTTCAGCCATTTCGGTAGATCCGGATTTTGTGCCACCATCAGAAGGTGGAAATCCCATATCTGCCGGTGTAGTGGTTGGAATTGTGGTTGCTGTGCTCTTGGTTATCATCTTGGTTCTTGGAGTGTTGTGGTGGAGAGGCTGCCTAACAAAGAAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAGGTTCATTTGCATTAAGACAAATTAAAGCTGCCACGAACAATTTTGATCCTGCCAATAAGATTGGGGAAGGTGGATTTGGTCCTGTCTACAAGGGTGTTCTTGCAGATGGCACTGTTATTGCAGTGAAACAACTTTCTTCAAAATCAAAGCAAGGAAATCGTGAATTTGTGAATGAAATAGGCATGATATCTGCATTGCAGCACCCACATCTAGTGAAGCTCCATGGATGCTGTATTGAAGGAAATCAACTTTTGCTAATATATGAGTACCTGGAAAATAATAGTCTTGCTCGTGCTTTATTCGGACCCGAAGAATATCAAATAAAATTGGATTGGCCAACTAGGCACAAGATTTGTGTTGGCATTGCTAGAGGTTTAGCATATCTTCATGAGGAGTCAAGACTAAAAATTGTTCACCGAGACATCAAAGCTACCAATGTTCTACTCGATAAAAGTCTCAACCCCAAGATTTCTGACTTCGGTTTGGCGAAGCTTGATGAAGAAGAAAATACACACATCAGCACTCGGGTTGCTGGAACCTTTGGGTATATGGCACCAGAATACGCCATGCGAGGCTATTTAACTGACAAAGCAGATGTTTATAGTTTTGGCATCGTGGCGTTAGAAATAGCCAGTGGACGAAACAACACAAGTTATCGAACCAAGGATGATTGCTTTTACCTTCTAGACCATGCTAATACTTTAAAAGAGAAAAACAGTTTGCTCGAGCTTGTTGATGCACGGTTAGGCTCGGACTTCAACAAGAGTGAGGCATTGACGATGATCAATGTTGCTCTCCAATGTACAAACATAATTTATACCGACAGACCTGCCATGTCATCAGTGGTGAGCATGCTAGAAGGGAAGGTTGCTTATAAAGAGGTGGTTTCAGACCCCAGTGTCTCAAAACAAGATATGAATGCAATGTGGAGCCAAATTTATCGCCAAAAAGGGGAAACAACGGGCGAGAGCCAGACGCAAAGTATGATGGATGGACCGTGGACGGGCTCTTCAACTTCTGCAAGTGATCTCTATCCCATCAACATTGATTCCAAGTACTTGGAGAACAGGAACTAG 3018 42.54 MFLARSLAVVFLTSLCFTTLASAATRLPADEVEALAAIGKTLGKTDWNFDADPCGGVASGWISSSSLDPGFNNTVFCDCNFLNKTVCHVTNILLKAQSLPGTLPPEIGRLPFLQELDLTRNYLNGTIPPEWGSSNLVKISLLGNRLTGPIPKEIGNISTLVDLVLEMNHLSGSVPAELGNLRNLSRLLLTSNNFSGELPSSLARIASLTDFRISDNHFTGPIPKFIQNLTNLSKVAIQASGLSGPIPSEIGLLTQLSDLRISDLNGNSSSFPPLNTLTKLKVLILRNCNITGMLPGNLGGLTALKTLDFSFNKIIGQVPGTFEALKKVDSIYLTGNLLNGSVPTWMLQQGESIDLSYNKFNSQNVGCQSRNLNLFASSLKDNNSSGTVSCLPSTCGKTFYSLHINCGGKEELINGTTKFDDDTNTGKSSLFFQGGANWGFSNTGSFMDDDRTTDDFIALNVSALSMPNSELYSRARISPISLTYYAYCMGSGNYTVSLHFAEIAFTNDKTYRSLGRRLFDVYVQGKLEMKDFNIADAAGGVGKPFVKKFTVSVTNGTIEIRLFWAGKGSNAIPVRGVYGPLISAISVDPDFVPPSEGGNPISAGVVVGIVVAVLLVIILVLGVLWWRGCLTKKSTLEQELKGLDLGTGSFALRQIKAATNNFDPANKIGEGGFGPVYKGVLADGTVIAVKQLSSKSKQGNREFVNEIGMISALQHPHLVKLHGCCIEGNQLLLIYEYLENNSLARALFGPEEYQIKLDWPTRHKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKSLNPKISDFGLAKLDEEENTHISTRVAGTFGYMAPEYAMRGYLTDKADVYSFGIVALEIASGRNNTSYRTKDDCFYLLDHANTLKEKNSLLELVDARLGSDFNKSEALTMINVALQCTNIIYTDRPAMSSVVSMLEGKVAYKEVVSDPSVSKQDMNAMWSQIYRQKGETTGESQTQSMMDGPWTGSSTSASDLYPINIDSKYLENRN 1005
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37050159 37060652 + Sed0016037.2 Sed05g2500 715126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2500 1005 Gene3D Ribonuclease Inhibitor 269 372 IPR032675 -
Sed05g2500 1005 Gene3D Ribonuclease Inhibitor 193 268 IPR032675 -
Sed05g2500 1005 SMART serkin_6 662 933 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2500 1005 Gene3D - 399 589 - -
Sed05g2500 1005 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 631 737 - -
Sed05g2500 1005 Pfam Malectin domain 401 585 IPR021720 -
Sed05g2500 1005 CDD STKc_IRAK 668 935 - -
Sed05g2500 1005 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515(InterPro)
Sed05g2500 1005 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 265 - -
Sed05g2500 1005 Gene3D Phosphorylase Kinase; domain 1 629 737 - -
Sed05g2500 1005 SUPERFAMILY Protein kinase-like (PK-like) 647 954 IPR011009 -
Sed05g2500 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2500 1005 Gene3D Ribonuclease Inhibitor 29 192 IPR032675 -
Sed05g2500 1005 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 399 590 - -
Sed05g2500 1005 FunFam Putative LRR receptor-like serine/threonine-protein kinase 738 945 - -
Sed05g2500 1005 ProSiteProfiles Protein kinase domain profile. 662 948 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2500 1005 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515(InterPro)
Sed05g2500 1005 Pfam Leucine Rich Repeat 113 132 IPR001611 GO:0005515(InterPro)
Sed05g2500 1005 Gene3D Transferase(Phosphotransferase) domain 1 738 947 - -
Sed05g2500 1005 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 950 IPR051824 -
Sed05g2500 1005 MobiDBLite consensus disorder prediction 964 984 - -
Sed05g2500 1005 Pfam Protein tyrosine and serine/threonine kinase 666 932 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2500 1005 SUPERFAMILY L domain-like 61 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g2500 Sed-Chr5:37050159 Sed05g2502 Sed-Chr5:37094130 0.00E+00 dispersed
Sed05g2499 Sed-Chr5:37050159 Sed05g2500 Sed-Chr5:37050159 0.00E+00 tandem
Sed05g2500 Sed-Chr5:37050159 Sed05g2501 Sed-Chr5:37063857 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79224 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2500 - - - 0.0