Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g2501 ATGTTGTTGGCTCGATTCGTCGCCATCGTTTTCGTCACATGTACCCTCGCGTCCGCCGCTACTCGCCTGCCGGTCGACGAAGTTGAAGCGTTGAGGGAGATCGGAAACACATTGGGGAAGACCGACTGGGATTTCACGGCGGATCCATGCGGCGGTTTGAACAGCCGTTGGATACGGGATTCTTCAGACCCTAATTTTGATAATAATGTCACCTGTAATTGCAACTTCCTCAACAATACCGTTTGCCACGTCACTAACATTGTTCTAAAGGCGCAAAGTCTTGCCGGTACTCTGCCACCGCAAATAGTGAGCTTGCCATTCCTGCAGCAACTTGATCTCACACGCAACTATCTCAATGGCTCGATTCCTCCACAATGGGCTTCATCCAAGCTTCTCAAACTTTCCCTTCTCGGAAATCGACTGACGGGTCCGATCCCAAAAGAGATTGGAAACATCACCACTCTTGAGGAGTTGGTTCTGGAAATGAATCATTTCTCTGGAAGTTTACCTTCAGAACTTGGAAATTTGACCAACTTATCAAGATTACTTCTTGCCTCAAACAACTTTTCTGGGGAGCTCCCATCTTCACTGGCAAGAATTACCTCATTGACGGAATTTCGGATTAGTGATAATCGCTTCACAGGGCCAATACCTAAGTTTTTACAGAATTGGATTCATCTCCAAATACTAGCTACTCAAGCAAGCGGGTTGAGCGGGCCAATTCCTTCCGAAATTGGACTTCTAACAAAATTACAGGATTTGAGAATCAGTGACTTGAGTGGAGGTTCATCATCCTTTCCACCCCTTGCTACTTTGACAAACTTGGATACCCTGATATTGAGGAGTTGCAATATAACCGGGGAGCTGCCCGACGATCTTGATCTGTTGATAGCATTGAGAATCATCGATTTCAGCTTTAACAAAATTACTGGACCAATACCTGAAAGTCTCTTTAAAGCTTTGCCGAAAGTGGATGACATATTTTTAACTGGAAACTTGCTCAATGGAACCGTGCCCACTTGGATGCCACTAGAGCCACGAAAAAGGATTGATCTCTCTTATAATAGATTTACTCAGAAAACTGATGACTGTCAATCACAAAGATTAAACCTATTTGCAAGCTCTTCACAGGACGATAATTCTGGAACAGTTTCATGTTTAGCGGGCCCTTGCAGAAAAACTTGGTACTCTCTCCATATCAACTGTGGTGGGAAGGAAGTAATGATCGGAGAGACCAAATTTGAAGGAGACACAAACCCTGGTACATCATCTTTTTTTTCAAAAGGTGGAGATAATTGGGGATTTAGCAACACTGGTAGTTTCACTGACAATGACCTTGAAGCAGACTCTTTTACTGTAGTAAAACCATCTGCTCTCTCAATCCCAAATTCTGAATTGTATACCGAGGCACGCATTTCTCCAATCTCTCTCACTTATTATGCATATTGTATGGGTAATGGAAACTACACAGTGAGCCTCTATTTTGCTGAGATAGCATTTACTAATGACAAATCATATAGAAGCCTTGGTCGGCGCGTATTTGATGTCTATGTTCAGGGAAAGCTGGAGTTGAAGGATTTTAATATCGCAGATGAAGCAGGTGGAGTTGGCAAATCTCTTGTAAAGAGATTCACGGTTTCTGTGACTAATGGTACTATGGAGATCCGCCTATTTTGGGCTGGGAAGGGGACAACTGTAATCCCTGTGAGAGGAGTTTACGGTCCTTTAATTTCAGCCATTTCTGTTGATTCTGACTTTGTGCCACCATCAGAAGGTGGAAATGCCATATCTGTCGGTGCAGTGGTTGGAATTGTGGCTGCTGTGATCTTTGTTATCATCTTTGTTCTTGGAGTCTTTTGGTGGAGAGGGTGTCTAAGAAAGCAAAGCACACTTGAACAAGAGTTGAAGGGTCTAGATCTAGGAACAAGTTCATTTTCATTAAGGCAAATCAAAGCTGCCACTAACAATTTTGATGCTGCCAATAAGATTGGAGAAGGCGGGTTTGGTCCTGTTTACAAGGGTGTTCTAGCAGATGGCACTGTAATGGCAGTGAAGCAACTTTCTTCAAAATCAAAACAAGGAAATCGAGAATTTTTAAATGAGATTGGGATGATATCTGCATTGCAACACCCTCATCTAGTGAAGCTTTATGGATGTTGTATTGAAGGAAATCAACTTTTGCTGATATATGAGTATCTAGAAAATAATAGTCTTGCCCGTGCATTATTTGGGCCTAAAGAATGTCAACTGAAATTGGATTGGCCAATTAGGCACAAGATTTGTGTCGCTATAGCTAGAGGCTTAGCATTCCTTCATGAGGAGTCAAGACTTAAAATCGTTCACCGAGACATCAAAGCTACCAATGTTCTACTTGATAAAAATCTTAACCCCAAGATTTCTGACTTTGGTTTGGCAAAGCTAGATGATGAAGAAAATACACATATTAGCACCCGGATTGCTGGAACCTATGGGTATATGGCACCAGAATATGCCATGCGAGGTCACCTAACAGACAAAGCAGATGTTTATAGCTTTGGCATCGTGGCTTTGGAAGTACTAAGCGGCCGAAGTAACACAATTTTCCGTTCCAAGGATGATTGTTTGTATCTTCTTGACTACGCTAATACTTTAAAAGAGGAAGGCAGGCTATTAGATCTTGTGGATTCACGATTAGACTCGGAATTCAACAAGGAAGAGGCAATGATGATGATCAATATAGCTCTCCGATGTACGAACGCCATTGCTGCAGAGAGACCTACCATGTCATCAGTGGTGAGCATGCTGGAAGGAAAGGTCCATGTGAAGGATGTTGTTTCAGATCCTAGCTTCTCAAAACAAGATGTGCATTATCACCAAAAAGGGAAAACGAAAGACGAGAGTCCGACACAAAATATATCAATGGTTGGACCGTGGACAGGTTCCTCGATGTCTGGAAGTGATCTCTATCCCATGCTCATGGATTCTCAATACTTGGAGAGCAGGAATTAG 2988 42.64 MLLARFVAIVFVTCTLASAATRLPVDEVEALREIGNTLGKTDWDFTADPCGGLNSRWIRDSSDPNFDNNVTCNCNFLNNTVCHVTNIVLKAQSLAGTLPPQIVSLPFLQQLDLTRNYLNGSIPPQWASSKLLKLSLLGNRLTGPIPKEIGNITTLEELVLEMNHFSGSLPSELGNLTNLSRLLLASNNFSGELPSSLARITSLTEFRISDNRFTGPIPKFLQNWIHLQILATQASGLSGPIPSEIGLLTKLQDLRISDLSGGSSSFPPLATLTNLDTLILRSCNITGELPDDLDLLIALRIIDFSFNKITGPIPESLFKALPKVDDIFLTGNLLNGTVPTWMPLEPRKRIDLSYNRFTQKTDDCQSQRLNLFASSSQDDNSGTVSCLAGPCRKTWYSLHINCGGKEVMIGETKFEGDTNPGTSSFFSKGGDNWGFSNTGSFTDNDLEADSFTVVKPSALSIPNSELYTEARISPISLTYYAYCMGNGNYTVSLYFAEIAFTNDKSYRSLGRRVFDVYVQGKLELKDFNIADEAGGVGKSLVKRFTVSVTNGTMEIRLFWAGKGTTVIPVRGVYGPLISAISVDSDFVPPSEGGNAISVGAVVGIVAAVIFVIIFVLGVFWWRGCLRKQSTLEQELKGLDLGTSSFSLRQIKAATNNFDAANKIGEGGFGPVYKGVLADGTVMAVKQLSSKSKQGNREFLNEIGMISALQHPHLVKLYGCCIEGNQLLLIYEYLENNSLARALFGPKECQLKLDWPIRHKICVAIARGLAFLHEESRLKIVHRDIKATNVLLDKNLNPKISDFGLAKLDDEENTHISTRIAGTYGYMAPEYAMRGHLTDKADVYSFGIVALEVLSGRSNTIFRSKDDCLYLLDYANTLKEEGRLLDLVDSRLDSEFNKEEAMMMINIALRCTNAIAAERPTMSSVVSMLEGKVHVKDVVSDPSFSKQDVHYHQKGKTKDESPTQNISMVGPWTGSSMSGSDLYPMLMDSQYLESRN 995
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 37063857 37078867 + Sed0026880.1 Sed05g2501 715127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g2501 995 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 944 IPR051824 -
Sed05g2501 995 Gene3D Ribonuclease Inhibitor 194 262 IPR032675 -
Sed05g2501 995 FunFam Putative LRR receptor-like serine/threonine-protein kinase 733 940 - -
Sed05g2501 995 SMART serkin_6 657 928 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2501 995 Gene3D Ribonuclease Inhibitor 40 193 IPR032675 -
Sed05g2501 995 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 24 260 - -
Sed05g2501 995 Gene3D - 395 585 - -
Sed05g2501 995 ProSiteProfiles Protein kinase domain profile. 657 943 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g2501 995 Pfam Protein tyrosine and serine/threonine kinase 660 928 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2501 995 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515(InterPro)
Sed05g2501 995 Pfam Leucine Rich Repeat 299 318 IPR001611 GO:0005515(InterPro)
Sed05g2501 995 Pfam Leucine Rich Repeat 178 198 IPR001611 GO:0005515(InterPro)
Sed05g2501 995 Pfam Leucine Rich Repeat 202 224 IPR001611 GO:0005515(InterPro)
Sed05g2501 995 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 626 732 - -
Sed05g2501 995 SUPERFAMILY L domain-like 57 339 - -
Sed05g2501 995 Gene3D Ribonuclease Inhibitor 263 375 IPR032675 -
Sed05g2501 995 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g2501 995 SUPERFAMILY Protein kinase-like (PK-like) 641 945 IPR011009 -
Sed05g2501 995 Gene3D Phosphorylase Kinase; domain 1 623 732 - -
Sed05g2501 995 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 395 585 - -
Sed05g2501 995 Pfam Malectin domain 397 580 IPR021720 -
Sed05g2501 995 CDD STKc_IRAK 663 930 - -
Sed05g2501 995 Gene3D Transferase(Phosphotransferase) domain 1 733 941 - -
Sed05g2501 995 MobiDBLite consensus disorder prediction 945 970 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1886 Sed-Chr5:32252848 Sed05g2501 Sed-Chr5:37063857 2.40E-223 dispersed
Sed05g2501 Sed-Chr5:37063857 Sed05g2504 Sed-Chr5:37128156 0.00E+00 dispersed
Sed05g2500 Sed-Chr5:37050159 Sed05g2501 Sed-Chr5:37063857 0.00E+00 tandem
Sed05g2501 Sed-Chr5:37063857 Sed05g2502 Sed-Chr5:37094130 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79225 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g2501 - - - 0.0